Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
SESE_120250.g
View in Genome Browser
Position
Scaffold_145524:3530-28341 (-)
24811bp
Gene Type
gene
Gene Description (Protein Product)
Protein HASTY 1 isoform X1
Organism
Sequoia sempervirens
Also AS AT3G05040

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
SESE_122044.g PHAX RNA-binding domain
SESE_122412.g Small RNA
SESE_121129.g Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate- level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
Regulatory gene
SESE_001370.g Transcription factor
SESE_002563.g reveille
SESE_003268.g Transcription factor

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003002 regionalization BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003723 RNA binding MF
GO:0005049 nuclear export signal receptor activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0006403 RNA localization BP
GO:0006405 RNA export from nucleus BP
GO:0006810 transport BP
GO:0006913 nucleocytoplasmic transport BP
GO:0007275 multicellular organism development BP
GO:0007389 pattern specification process BP
GO:0008150 biological_process BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009798 axis specification BP
GO:0009909 regulation of flower development BP
GO:0009910 negative regulation of flower development BP
GO:0009943 adaxial/abaxial axis specification BP
GO:0009944 polarity specification of adaxial/abaxial axis BP
GO:0009955 adaxial/abaxial pattern specification BP
GO:0009965 leaf morphogenesis BP
GO:0010016 shoot system morphogenesis BP
GO:0015931 nucleobase-containing compound transport BP
GO:0022622 root system development BP
GO:0031074 nucleocytoplasmic transport complex CC
GO:0032386 regulation of intracellular transport BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032879 regulation of localization BP
GO:0032880 regulation of protein localization BP
GO:0032991 protein-containing complex CC
GO:0033036 macromolecule localization BP
GO:0033157 regulation of intracellular protein transport BP
GO:0042565 RNA nuclear export complex CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0046822 regulation of nucleocytoplasmic transport BP
GO:0046825 regulation of protein export from nucleus BP
GO:0046907 intracellular transport BP
GO:0048364 root development BP
GO:0048366 leaf development BP
GO:0048367 shoot system development BP
GO:0048519 negative regulation of biological process BP
GO:0048580 regulation of post-embryonic development BP
GO:0048581 negative regulation of post-embryonic development BP
GO:0048731 system development BP
GO:0048827 phyllome development BP
GO:0048831 regulation of shoot system development BP
GO:0048856 anatomical structure development BP
GO:0050657 nucleic acid transport BP
GO:0050658 RNA transport BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0051049 regulation of transport BP
GO:0051093 negative regulation of developmental process BP
GO:0051168 nuclear export BP
GO:0051169 nuclear transport BP
GO:0051179 localization BP
GO:0051223 regulation of protein transport BP
GO:0051234 establishment of localization BP
GO:0051236 establishment of RNA localization BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051241 negative regulation of multicellular organismal process BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0060341 regulation of cellular localization BP
GO:0061716 miRNA export from nucleus BP
GO:0065001 specification of axis polarity BP
GO:0065007 biological regulation BP
GO:0070201 regulation of establishment of protein localization BP
GO:0071702 organic substance transport BP
GO:0071705 nitrogen compound transport BP
GO:0090087 regulation of peptide transport BP
GO:0097064 ncRNA export from nucleus BP
GO:0097159 organic cyclic compound binding MF
GO:0099402 plant organ development BP
GO:0140104 molecular carrier activity MF
GO:0140142 nucleocytoplasmic carrier activity MF
GO:1901363 heterocyclic compound binding MF
GO:1903827 regulation of protein localization BP
GO:1905392 plant organ morphogenesis BP
GO:1990428 miRNA transport BP
GO:2000026 regulation of multicellular organismal development BP
GO:2000241 regulation of reproductive process BP
GO:2000242 negative regulation of reproductive process BP
KEGG Term Name Description
map03013 RNA transport RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.