PPGR - Gene Detail

Basic Information

Gene ID	SESE_122909.g View in Genome Browser
Position	Scaffold_152400:666591155-666591965 (-) 810bp
Gene Type	gene
Gene Description (Protein Product)	Neutral ceramidase-like
Organism	Sequoia sempervirens
Also AS	AT2G38010

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

SESE_124035.g Non-lysosomal glucosylceramidase that catalyzes the conversion of glucosylceramide to free glucose and ceramide

SESE_129930.g Long chain base biosynthesis protein

SESE_146426.g protease subunit of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of the SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. In the complex, it probably acts as the catalytic center that mediates the cleavage of Nedd8 from cullins. It however has no metalloprotease activity by itself and requires the other subunits of the CSN complex (By similarity). The CSN complex is involved in repression of photomorphogenesis in darkness by regulating the activity of COP1-containing Ubl ligase complexes. The complex is also required for degradation of PSIAA6 by regulating the activity of the Ubl ligase SCF-TIR complex. Involved in CSN's deneddylation derubylation activity. Required for the deneddylation of all cullins. Essential for the structural integrity of the CSN holocomplex

Regulatory gene

SESE_001250.g NAC domain-containing protein

SESE_007476.g dof zinc finger protein

SESE_020899.g transcription, DNA-templated

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005773	vacuole	CC
GO:0005774	vacuolar membrane	CC
GO:0005783	endoplasmic reticulum	CC
GO:0005794	Golgi apparatus	CC
GO:0006950	response to stress	BP
GO:0006979	response to oxidative stress	BP
GO:0008150	biological_process	BP
GO:0009987	cellular process	BP
GO:0012505	endomembrane system	CC
GO:0016020	membrane	CC
GO:0019725	cellular homeostasis	BP
GO:0031090	organelle membrane	CC
GO:0033554	cellular response to stress	BP
GO:0034599	cellular response to oxidative stress	BP
GO:0042221	response to chemical	BP
GO:0042592	homeostatic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044437	obsolete vacuolar part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0048878	chemical homeostasis	BP
GO:0050896	response to stimulus	BP
GO:0051716	cellular response to stimulus	BP
GO:0055082	intracellular chemical homeostasis	BP
GO:0055088	lipid homeostasis	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0070887	cellular response to chemical stimulus	BP
GO:0090156	intracellular sphingolipid homeostasis	BP
GO:0098588	bounding membrane of organelle	CC
GO:0098805	membrane	CC

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00600	Sphingolipid metabolism	-