Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
SESE_124860.g
View in Genome Browser
Position
Scaffold_222807:13461-13805 (-)
344bp
Gene Type
gene
Gene Description (Protein Product)
Bromodomain extra-terminal - transcription regulation
Organism
Sequoia sempervirens
Also AS

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
SESE_139199.g 26S protease regulatory subunit 6B
SESE_139425.g 26S protease regulatory subunit 6B
SESE_146211.g 26S protease regulatory subunit 6B
Regulatory gene
SESE_002563.g reveille
SESE_003268.g Transcription factor
SESE_003364.g isoform X1

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000082 G1/S transition of mitotic cell cycle BP
GO:0000083 regulation of transcription involved in G1/S transition of mitotic cell cycle BP
GO:0000228 nuclear chromosome CC
GO:0000278 mitotic cell cycle BP
GO:0000280 nuclear division BP
GO:0000307 cyclin-dependent protein kinase holoenzyme complex CC
GO:0000428 DNA-directed RNA polymerase complex CC
GO:0000578 embryonic axis specification BP
GO:0000785 chromatin CC
GO:0000790 chromatin CC
GO:0000793 condensed chromosome CC
GO:0000794 condensed nuclear chromosome CC
GO:0000902 cell morphogenesis BP
GO:0000904 cell morphogenesis involved in differentiation BP
GO:0000993 RNA polymerase II complex binding MF
GO:0001098 basal transcription machinery binding MF
GO:0001099 basal RNA polymerase II transcription machinery binding MF
GO:0001207 obsolete histone displacement BP
GO:0001701 in utero embryonic development BP
GO:0001824 blastocyst development BP
GO:0001832 blastocyst growth BP
GO:0001833 inner cell mass cell proliferation BP
GO:0001932 regulation of protein phosphorylation BP
GO:0002039 p53 binding MF
GO:0002376 immune system process BP
GO:0002520 immune system development BP
GO:0002574 thrombocyte differentiation BP
GO:0003002 regionalization BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003682 chromatin binding MF
GO:0003712 transcription coregulator activity MF
GO:0003713 transcription coactivator activity MF
GO:0003824 catalytic activity MF
GO:0004672 protein kinase activity MF
GO:0004674 protein serine/threonine kinase activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005665 RNA polymerase II, core complex CC
GO:0005694 chromosome CC
GO:0005730 nucleolus CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0006323 chromosome organization BP
GO:0006325 chromatin organization BP
GO:0006333 chromatin organization BP
GO:0006334 nucleosome assembly BP
GO:0006338 chromatin remodeling BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0006464 protein modification process BP
GO:0006468 protein phosphorylation BP
GO:0006473 protein acetylation BP
GO:0006475 internal protein amino acid acetylation BP
GO:0006793 phosphorus metabolic process BP
GO:0006796 phosphate-containing compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006974 cellular response to DNA damage stimulus BP
GO:0006996 organelle organization BP
GO:0007049 cell cycle BP
GO:0007059 chromosome segregation BP
GO:0007127 meiosis I BP
GO:0007140 male meiotic nuclear division BP
GO:0007141 male meiosis I BP
GO:0007275 multicellular organism development BP
GO:0007276 gamete generation BP
GO:0007283 spermatogenesis BP
GO:0007346 regulation of mitotic cell cycle BP
GO:0007350 blastoderm segmentation BP
GO:0007351 tripartite regional subdivision BP
GO:0007354 zygotic determination of anterior/posterior axis, embryo BP
GO:0007362 terminal region determination BP
GO:0007389 pattern specification process BP
GO:0007399 nervous system development BP
GO:0008022 obsolete protein C-terminus binding MF
GO:0008023 transcription elongation factor complex CC
GO:0008024 cyclin/CDK positive transcription elongation factor complex CC
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008283 cell population proliferation BP
GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity MF
GO:0008595 anterior/posterior axis specification, embryo BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009790 embryo development BP
GO:0009792 embryo development ending in birth or egg hatching BP
GO:0009798 axis specification BP
GO:0009880 embryonic pattern specification BP
GO:0009889 regulation of biosynthetic process BP
GO:0009890 negative regulation of biosynthetic process BP
GO:0009891 positive regulation of biosynthetic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009893 positive regulation of metabolic process BP
GO:0009948 anterior/posterior axis specification BP
GO:0009952 anterior/posterior pattern specification BP
GO:0009966 regulation of signal transduction BP
GO:0009967 positive regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0010389 regulation of G2/M transition of mitotic cell cycle BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010557 positive regulation of macromolecule biosynthetic process BP
GO:0010558 negative regulation of macromolecule biosynthetic process BP
GO:0010564 regulation of cell cycle process BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010628 positive regulation of gene expression BP
GO:0010629 negative regulation of gene expression BP
GO:0010646 regulation of cell communication BP
GO:0010647 positive regulation of cell communication BP
GO:0010971 positive regulation of G2/M transition of mitotic cell cycle BP
GO:0016043 cellular component organization BP
GO:0016301 kinase activity MF
GO:0016310 phosphorylation BP
GO:0016358 dendrite development BP
GO:0016569 obsolete covalent chromatin modification BP
GO:0016570 histone modification BP
GO:0016573 histone acetylation BP
GO:0016591 RNA polymerase II, holoenzyme CC
GO:0016604 nuclear body CC
GO:0016607 nuclear speck CC
GO:0016740 transferase activity MF
GO:0016772 transferase activity, transferring phosphorus-containing groups MF
GO:0016773 phosphotransferase activity, alcohol group as acceptor MF
GO:0018193 peptidyl-amino acid modification BP
GO:0018205 peptidyl-lysine modification BP
GO:0018393 internal peptidyl-lysine acetylation BP
GO:0018394 peptidyl-lysine acetylation BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019220 regulation of phosphate metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0019899 enzyme binding MF
GO:0019908 nuclear cyclin-dependent protein kinase holoenzyme complex CC
GO:0019953 sexual reproduction BP
GO:0022008 neurogenesis BP
GO:0022402 cell cycle process BP
GO:0022412 cellular process involved in reproduction in multicellular organism BP
GO:0022414 reproductive process BP
GO:0022607 cellular component assembly BP
GO:0023051 regulation of signaling BP
GO:0023056 positive regulation of signaling BP
GO:0030030 cell projection organization BP
GO:0030097 hemopoiesis BP
GO:0030099 myeloid cell differentiation BP
GO:0030154 cell differentiation BP
GO:0030182 neuron differentiation BP
GO:0030880 RNA polymerase complex CC
GO:0031175 neuron projection development BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031327 negative regulation of cellular biosynthetic process BP
GO:0031328 positive regulation of cellular biosynthetic process BP
GO:0031347 regulation of defense response BP
GO:0031399 regulation of protein modification process BP
GO:0031497 chromatin organization BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032101 regulation of response to external stimulus BP
GO:0032268 regulation of protein metabolic process BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032504 multicellular organism reproduction BP
GO:0032784 regulation of DNA-templated transcription elongation BP
GO:0032786 positive regulation of DNA-templated transcription, elongation BP
GO:0032806 carboxy-terminal domain protein kinase complex CC
GO:0032968 positive regulation of transcription elongation by RNA polymerase II BP
GO:0032989 cellular component morphogenesis BP
GO:0032990 cell part morphogenesis BP
GO:0032991 protein-containing complex CC
GO:0033554 cellular response to stress BP
GO:0034211 GTP-dependent protein kinase activity MF
GO:0034243 regulation of transcription elongation by RNA polymerase II BP
GO:0034622 protein-containing complex assembly BP
GO:0034728 nucleosome organization BP
GO:0035282 segmentation BP
GO:0036211 protein modification process BP
GO:0040007 growth BP
GO:0042325 regulation of phosphorylation BP
GO:0042393 histone binding MF
GO:0043009 chordate embryonic development BP
GO:0043122 regulation of I-kappaB kinase/NF-kappaB signaling BP
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling BP
GO:0043170 macromolecule metabolic process BP
GO:0043175 RNA polymerase core enzyme binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043388 positive regulation of DNA binding BP
GO:0043412 macromolecule modification BP
GO:0043484 regulation of RNA splicing BP
GO:0043543 protein acylation BP
GO:0043933 protein-containing complex organization BP
GO:0043966 histone H3 acetylation BP
GO:0043967 histone H4 acetylation BP
GO:0043983 histone H4-K12 acetylation BP
GO:0044085 cellular component biogenesis BP
GO:0044093 positive regulation of molecular function BP
GO:0044154 histone H3-K14 acetylation BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044427 obsolete chromosomal part CC
GO:0044428 obsolete nuclear part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044454 obsolete nuclear chromosome part CC
GO:0044464 obsolete cell part CC
GO:0044703 multi-organism reproductive process BP
GO:0044770 cell cycle phase transition BP
GO:0044772 mitotic cell cycle phase transition BP
GO:0044843 cell cycle G1/S phase transition BP
GO:0044877 protein-containing complex binding MF
GO:0045309 protein phosphorylated amino acid binding MF
GO:0045787 positive regulation of cell cycle BP
GO:0045892 negative regulation of DNA-templated transcription BP
GO:0045893 positive regulation of DNA-templated transcription BP
GO:0045931 positive regulation of mitotic cell cycle BP
GO:0045934 negative regulation of nucleobase-containing compound metabolic process BP
GO:0045935 positive regulation of nucleobase-containing compound metabolic process BP
GO:0045944 positive regulation of transcription by RNA polymerase II BP
GO:0046777 protein autophosphorylation BP
GO:0048232 male gamete generation BP
GO:0048285 organelle fission BP
GO:0048468 cell development BP
GO:0048513 animal organ development BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0048534 hematopoietic or lymphoid organ development BP
GO:0048583 regulation of response to stimulus BP
GO:0048584 positive regulation of response to stimulus BP
GO:0048585 negative regulation of response to stimulus BP
GO:0048589 developmental growth BP
GO:0048609 multicellular organismal reproductive process BP
GO:0048666 neuron development BP
GO:0048667 cell morphogenesis involved in neuron differentiation BP
GO:0048699 generation of neurons BP
GO:0048731 system development BP
GO:0048812 neuron projection morphogenesis BP
GO:0048813 dendrite morphogenesis BP
GO:0048856 anatomical structure development BP
GO:0048858 cell projection morphogenesis BP
GO:0048869 cellular developmental process BP
GO:0050727 regulation of inflammatory response BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050815 phosphoserine residue binding MF
GO:0050896 response to stimulus BP
GO:0051037 regulation of transcription involved in meiotic cell cycle BP
GO:0051039 positive regulation of transcription involved in meiotic cell cycle BP
GO:0051098 regulation of binding BP
GO:0051099 positive regulation of binding BP
GO:0051101 regulation of DNA binding BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051172 negative regulation of nitrogen compound metabolic process BP
GO:0051173 positive regulation of nitrogen compound metabolic process BP
GO:0051174 regulation of phosphorus metabolic process BP
GO:0051219 phosphoprotein binding MF
GO:0051246 regulation of protein metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051253 negative regulation of RNA metabolic process BP
GO:0051254 positive regulation of RNA metabolic process BP
GO:0051276 chromosome organization BP
GO:0051321 meiotic cell cycle BP
GO:0051704 obsolete multi-organism process BP
GO:0051716 cellular response to stimulus BP
GO:0051726 regulation of cell cycle BP
GO:0055029 nuclear DNA-directed RNA polymerase complex CC
GO:0060255 regulation of macromolecule metabolic process BP
GO:0061695 transferase complex, transferring phosphorus-containing groups CC
GO:0061982 meiosis I cell cycle process BP
GO:0065003 protein-containing complex assembly BP
GO:0065004 protein-DNA complex assembly BP
GO:0065007 biological regulation BP
GO:0065009 regulation of molecular function BP
GO:0070013 intracellular organelle lumen CC
GO:0070063 RNA polymerase binding MF
GO:0070577 lysine-acetylated histone binding MF
GO:0071103 DNA conformation change BP
GO:0071704 organic substance metabolic process BP
GO:0071824 protein-DNA complex subunit organization BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0080134 regulation of response to stress BP
GO:0080135 regulation of cellular response to stress BP
GO:0090068 positive regulation of cell cycle process BP
GO:0097159 organic cyclic compound binding MF
GO:0099122 RNA polymerase II C-terminal domain binding MF
GO:0120036 plasma membrane bounded cell projection organization BP
GO:0120039 plasma membrane bounded cell projection morphogenesis BP
GO:0140013 meiotic nuclear division BP
GO:0140030 modification-dependent protein binding MF
GO:0140033 acetylation-dependent protein binding MF
GO:0140096 catalytic activity, acting on a protein MF
GO:0140110 transcription regulator activity MF
GO:1901363 heterocyclic compound binding MF
GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901976 regulation of cell cycle checkpoint BP
GO:1901977 negative regulation of cell cycle checkpoint BP
GO:1901987 regulation of cell cycle phase transition BP
GO:1901989 positive regulation of cell cycle phase transition BP
GO:1901990 regulation of mitotic cell cycle phase transition BP
GO:1901992 positive regulation of mitotic cell cycle phase transition BP
GO:1902494 catalytic complex CC
GO:1902531 regulation of intracellular signal transduction BP
GO:1902533 positive regulation of intracellular signal transduction BP
GO:1902554 serine/threonine protein kinase complex CC
GO:1902679 negative regulation of RNA biosynthetic process BP
GO:1902680 positive regulation of RNA biosynthetic process BP
GO:1902749 regulation of cell cycle G2/M phase transition BP
GO:1902751 positive regulation of cell cycle G2/M phase transition BP
GO:1902911 protein kinase complex CC
GO:1903046 meiotic cell cycle process BP
GO:1903047 mitotic cell cycle process BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1903507 negative regulation of nucleic acid-templated transcription BP
GO:1903508 positive regulation of nucleic acid-templated transcription BP
GO:1990234 transferase complex CC
GO:1990269 RNA polymerase II C-terminal domain phosphoserine binding MF
GO:2000001 regulation of DNA damage checkpoint BP
GO:2000002 negative regulation of DNA damage checkpoint BP
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000113 negative regulation of cellular macromolecule biosynthetic process BP
GO:2001020 regulation of response to DNA damage stimulus BP
GO:2001021 negative regulation of response to DNA damage stimulus BP
GO:2001141 regulation of RNA biosynthetic process BP
KEGG Term Name Description
map03008 Ribosome biogenesis in eukaryotes Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.