Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
SESE_139503.g
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Position
Scaffold_142490:329161614-329163005 (+)
1391bp
Gene Type
gene
Gene Description (Protein Product)
Splicing factor 3B subunit
Organism
Sequoia sempervirens
Also AS AT5G64270

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
SESE_141804.g Splicing factor 3B subunit
SESE_148013.g SNW SKI-interacting protein-like
SESE_141370.g Pentatricopeptide repeat-containing protein
Regulatory gene
SESE_003751.g transcription factor
SESE_006675.g Zinc finger AN1 and C2H2 domain-containing stress-associated protein
SESE_006940.g Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.