PPGR - Gene Detail

Basic Information

Gene ID	GSVIVG01016461001.Genoscope12X.g View in Genome Browser
Position	chr13:3681072-3688556 (+) 7484bp
Gene Type	gene
Gene Description (Protein Product)	DA1-related
Organism	Vitis vinifera
Also AS	AT2G39830Vitvi13g00364

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

GSVIVG01023471001.Genoscope12X.g Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked

GSVIVG01023461001.Genoscope12X.g Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked

GSVIVG01026310001.Genoscope12X.g Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked Lys-48-linked is involved in protein degradation via the proteasome

Regulatory gene

GSVIVG01000802001.Genoscope12X.g Floral homeotic protein

GSVIVG01001437001.Genoscope12X.g Agamous-like MADS-box protein AGL15

GSVIVG01001701001.Genoscope12X.g transcription regulatory region sequence-specific DNA binding

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0007275	multicellular organism development	BP
GO:0008150	biological_process	BP
GO:0009888	tissue development	BP
GO:0010087	phloem or xylem histogenesis	BP
GO:0010088	phloem development	BP
GO:0022622	root system development	BP
GO:0032182	ubiquitin-like protein binding	MF
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0043130	ubiquitin binding	MF
GO:0048364	root development	BP
GO:0048731	system development	BP
GO:0048856	anatomical structure development	BP
GO:0099402	plant organ development	BP