PPGR - Gene Detail

Basic Information

Gene ID	GSVIVG01020566001.Genoscope12X.g View in Genome Browser
Position	chr12:4242618-4265306 (+) 22688bp
Gene Type	gene
Gene Description (Protein Product)	belongs to the HAD-like hydrolase superfamily. MasA MtnC family
Organism	Vitis vinifera
Also AS	AT5G53850Vitvi12g04066

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

GSVIVG01022403001.Genoscope12X.g RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site

GSVIVG01024109001.Genoscope12X.g 5'-methylthioadenosine S-adenosylhomocysteine nucleosidase

GSVIVG01037913001.Genoscope12X.g methylthioribose

Regulatory gene

GSVIVG01000089001.Genoscope12X.g Protein ALWAYS EARLY

GSVIVG01001237001.Genoscope12X.g transcription factor

GSVIVG01001371001.Genoscope12X.g Bromodomain-containing protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00270	Cysteine and methionine metabolism	Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].