PPGR - Gene Detail

Basic Information

Gene ID	GSVIVG01023733001.Genoscope12X.g View in Genome Browser
Position	chr11:10251662-10252916 (-) 1254bp
Gene Type	gene
Gene Description (Protein Product)	"PsaA and PsaB bind P700
Organism	Vitis vinifera
Also AS	ATCG00350Vitvi11g01528

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

GSVIVG01030053001.Genoscope12X.g The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

GSVIVG01034636001.Genoscope12X.g essential for photochemical activity. FB is the terminal electron acceptor of PSI, donating electrons to ferredoxin. The C-terminus interacts with PsaA B D and helps assemble the protein into the PSI complex. Required for binding of PsaD and PsaE to PSI. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn

GSVIVG01028481001.Genoscope12X.g Photosystem I reaction center subunit IV

Regulatory gene

GSVIVG01000802001.Genoscope12X.g Floral homeotic protein

GSVIVG01001437001.Genoscope12X.g Agamous-like MADS-box protein AGL15

GSVIVG01001701001.Genoscope12X.g transcription regulatory region sequence-specific DNA binding

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00195	Photosynthesis	Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.