PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	GSVIVG01026871001.Genoscope12X.g View in Genome Browser
Position	chr15:19739211-19749790 (-) 10579bp
Gene Type	gene
Gene Description (Protein Product)	Putative lipopolysaccharide-modifying enzyme.
Organism	Vitis vinifera
Also AS	AT2G45830Vitvi15g01158

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	GSVIVG01028040001.Genoscope12X.g pectinesterase pectinesterase inhibitor GSVIVG01035860001.Genoscope12X.g - GSVIVG01036082001.Genoscope12X.g RNA-binding protein
Regulatory gene	GSVIVG01000802001.Genoscope12X.g Floral homeotic protein GSVIVG01001437001.Genoscope12X.g Agamous-like MADS-box protein AGL15 GSVIVG01001701001.Genoscope12X.g transcription regulatory region sequence-specific DNA binding

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map00514	Other types of O-glycan biosynthesis	O-mannosyl glycans are a type of O-glycans that are found both in eukaryotes and prokaryotes. Biosynthesis of O-mannosyl glycans is initiated by the transfer of mannose from Man-P-Dol to serine or threonine residue, which is catalyzed by protein O-mannosyltransferases POMT1 and POMT2. Defects of these genes are linked to human diseases, such as muscular dystrophies caused by reduced O-mannosylation of alpha-dystroglycan in skeletal muscles [DS:H00120].