PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	GSVIVG01030502001.Genoscope12X.g View in Genome Browser
Position	chr12:6254942-6262636 (-) 7694bp
Gene Type	gene
Gene Description (Protein Product)	Small ubiquitin-related modifier
Organism	Vitis vinifera
Also AS	AT4G26840Vitvi12g00439

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	GSVIVG01035914001.Genoscope12X.g Aspartate aminotransferase GSVIVG01033233001.Genoscope12X.g Glycerol-3-phosphate dehydrogenase NAD GSVIVG01032685001.Genoscope12X.g Belongs to the chalcone isomerase family
Regulatory gene	GSVIVG01009841001.Genoscope12X.g Protein BASIC PENTACYSTEINE6-like GSVIVG01009844001.Genoscope12X.g Protein BASIC PENTACYSTEINE6-like GSVIVG01009845001.Genoscope12X.g Protein BASIC PENTACYSTEINE6-like

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map03013	RNA transport	RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.