PPGR - Gene Detail

Basic Information

Gene ID	GSVIVG01031348001.Genoscope12X.g View in Genome Browser
Position	chr14:156573-157231 (-) 658bp
Gene Type	gene
Gene Description (Protein Product)	structural constituent of nuclear pore
Organism	Vitis vinifera
Also AS	AT1G10390Vitvi15g04661

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

GSVIVG01033240001.Genoscope12X.g Nuclear pore protein

GSVIVG01035804001.Genoscope12X.g GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle

GSVIVG01035805001.Genoscope12X.g GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle

Regulatory gene

GSVIVG01000802001.Genoscope12X.g Floral homeotic protein

GSVIVG01001437001.Genoscope12X.g Agamous-like MADS-box protein AGL15

GSVIVG01001701001.Genoscope12X.g transcription regulatory region sequence-specific DNA binding

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map03013	RNA transport	RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.