PPGR - Gene Detail

Basic Information

Gene ID	GSVIVG01032138001.Genoscope12X.g View in Genome Browser
Position	chr13:22272771-22279676 (+) 6905bp
Gene Type	gene
Gene Description (Protein Product)	Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks
Organism	Vitis vinifera
Also AS	AT3G23890Vitvi13g01699

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

GSVIVG01033181001.Genoscope12X.g Structural maintenance of chromosomes protein

GSVIVG01035323001.Genoscope12X.g belongs to the protein kinase superfamily

GSVIVG01033598001.Genoscope12X.g Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases

Regulatory gene

GSVIVG01002242001.Genoscope12X.g dof zinc finger protein

GSVIVG01003947001.Genoscope12X.g dof zinc finger protein

GSVIVG01005057001.Genoscope12X.g Dof zinc finger protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000075	cell cycle checkpoint signaling	BP
GO:0000278	mitotic cell cycle	BP
GO:0000280	nuclear division	BP
GO:0000712	resolution of meiotic recombination intermediates	BP
GO:0000819	sister chromatid segregation	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0003916	DNA topoisomerase activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006259	DNA metabolic process	BP
GO:0006310	DNA recombination	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006996	organelle organization	BP
GO:0007049	cell cycle	BP
GO:0007059	chromosome segregation	BP
GO:0007093	mitotic cell cycle checkpoint signaling	BP
GO:0007127	meiosis I	BP
GO:0007131	reciprocal meiotic recombination	BP
GO:0007346	regulation of mitotic cell cycle	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009987	cellular process	BP
GO:0016043	cellular component organization	BP
GO:0016853	isomerase activity	MF
GO:0022402	cell cycle process	BP
GO:0022414	reproductive process	BP
GO:0031570	DNA integrity checkpoint signaling	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0035825	homologous recombination	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044464	obsolete cell part	CC
GO:0044774	mitotic DNA integrity checkpoint signaling	BP
GO:0045132	meiotic chromosome segregation	BP
GO:0045786	negative regulation of cell cycle	BP
GO:0045930	negative regulation of mitotic cell cycle	BP
GO:0046483	heterocycle metabolic process	BP
GO:0048285	organelle fission	BP
GO:0048519	negative regulation of biological process	BP
GO:0048523	negative regulation of cellular process	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0051276	chromosome organization	BP
GO:0051304	chromosome separation	BP
GO:0051307	meiotic chromosome separation	BP
GO:0051321	meiotic cell cycle	BP
GO:0051726	regulation of cell cycle	BP
GO:0061982	meiosis I cell cycle process	BP
GO:0065007	biological regulation	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0098813	nuclear chromosome segregation	BP
GO:0140013	meiotic nuclear division	BP
GO:0140097	catalytic activity, acting on DNA	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1903046	meiotic cell cycle process	BP
GO:1903047	mitotic cell cycle process	BP