PPGR - Gene Detail

Basic Information

Gene ID	GSVIVG01032681001.Genoscope12X.g View in Genome Browser
Position	chr13:1578645-1580497 (+) 1852bp
Gene Type	gene
Gene Description (Protein Product)	"atexp8
Organism	Vitis vinifera
Also AS	AT2G40610Vitvi13g00172

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

GSVIVG01034178001.Genoscope12X.g Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties

GSVIVG01036914001.Genoscope12X.g Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties

Regulatory gene

GSVIVG01000802001.Genoscope12X.g Floral homeotic protein

GSVIVG01001437001.Genoscope12X.g Agamous-like MADS-box protein AGL15

GSVIVG01001701001.Genoscope12X.g transcription regulatory region sequence-specific DNA binding

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005618	cell wall	CC
GO:0005623	obsolete cell	CC
GO:0006949	syncytium formation	BP
GO:0008150	biological_process	BP
GO:0009653	anatomical structure morphogenesis	BP
GO:0009987	cellular process	BP
GO:0016020	membrane	CC
GO:0030312	external encapsulating structure	CC
GO:0032502	developmental process	BP
GO:0044464	obsolete cell part	CC
GO:0048646	anatomical structure formation involved in morphogenesis	BP
GO:0048856	anatomical structure development	BP
GO:0071944	cell periphery	CC