Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
GSVIVG01034467001.Genoscope12X.g
View in Genome Browser
Position
chr18:20855587-20865341 (-)
9754bp
Gene Type
gene
Gene Description (Protein Product)
tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase
Organism
Vitis vinifera
Also AS AT1G72090Vitvi18g01700

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
GSVIVG01036642001.Genoscope12X.g DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
GSVIVG01036597001.Genoscope12X.g RNA polymerase Rpb2, domain 7
GSVIVG01036596001.Genoscope12X.g DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
Regulatory gene
GSVIVG01000386001.Genoscope12X.g Zinc-finger homeodomain protein
GSVIVG01002242001.Genoscope12X.g dof zinc finger protein
GSVIVG01002536001.Genoscope12X.g AP2-like ethylene-responsive transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0002064 epithelial cell development BP
GO:0002065 columnar/cuboidal epithelial cell differentiation BP
GO:0002066 columnar/cuboidal epithelial cell development BP
GO:0002067 glandular epithelial cell differentiation BP
GO:0002068 glandular epithelial cell development BP
GO:0003309 type B pancreatic cell differentiation BP
GO:0003323 type B pancreatic cell development BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005783 endoplasmic reticulum CC
GO:0005789 endoplasmic reticulum membrane CC
GO:0005791 rough endoplasmic reticulum CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006396 RNA processing BP
GO:0006399 tRNA metabolic process BP
GO:0006400 tRNA modification BP
GO:0006412 translation BP
GO:0006518 peptide metabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0007275 multicellular organism development BP
GO:0008033 tRNA processing BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009451 RNA modification BP
GO:0009888 tissue development BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0016070 RNA metabolic process BP
GO:0016740 transferase activity MF
GO:0016782 transferase activity, transferring sulphur-containing groups MF
GO:0019538 protein metabolic process BP
GO:0030154 cell differentiation BP
GO:0030855 epithelial cell differentiation BP
GO:0031016 pancreas development BP
GO:0031018 endocrine pancreas development BP
GO:0031099 regeneration BP
GO:0031100 animal organ regeneration BP
GO:0031984 organelle subcompartment CC
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0034470 ncRNA processing BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0034660 ncRNA metabolic process BP
GO:0035270 endocrine system development BP
GO:0035596 methylthiotransferase activity MF
GO:0035598 N6-threonylcarbomyladenosine methylthiotransferase activity MF
GO:0035600 tRNA methylthiolation BP
GO:0035883 enteroendocrine cell differentiation BP
GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network CC
GO:0043043 peptide biosynthetic process BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043412 macromolecule modification BP
GO:0043603 amide metabolic process BP
GO:0043604 amide biosynthetic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044432 obsolete endoplasmic reticulum part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0046483 heterocycle metabolic process BP
GO:0048468 cell development BP
GO:0048513 animal organ development BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0050497 alkylthioltransferase activity MF
GO:0060429 epithelium development BP
GO:0071704 organic substance metabolic process BP
GO:0090304 nucleic acid metabolic process BP
GO:0098827 endoplasmic reticulum subcompartment CC
GO:1901360 organic cyclic compound metabolic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1990145 maintenance of translational fidelity BP
GO:1990798 pancreas regeneration BP