PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	GSVIVG01035173001.Genoscope12X.g View in Genome Browser
Position	chr11:12769375-12789437 (-) 20062bp
Gene Type	gene
Gene Description (Protein Product)	U4 U6.U5 tri-snRNP-associated protein
Organism	Vitis vinifera
Also AS	AT5G16780Vitvi11g01057

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	GSVIVG01038197001.Genoscope12X.g U6 snRNA-associated Sm-like protein GSVIVG01037230001.Genoscope12X.g Nuclear cap-binding protein subunit GSVIVG01038711001.Genoscope12X.g splicing factor 3A subunit
Regulatory gene	GSVIVG01000386001.Genoscope12X.g Zinc-finger homeodomain protein GSVIVG01001696001.Genoscope12X.g Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) GSVIVG01002066001.Genoscope12X.g Heat Stress Transcription Factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map03040	Spliceosome	After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.