PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	GSVIVG01035282001.Genoscope12X.g View in Genome Browser
Position	chr4:11913809-11938251 (-) 24442bp
Gene Type	gene
Gene Description (Protein Product)	Beta-catenin-like protein
Organism	Vitis vinifera
Also AS	AT3G02710Vitvi04g00901

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	GSVIVG01038711001.Genoscope12X.g splicing factor 3A subunit GSVIVG01037241001.Genoscope12X.g spliceosomal tri-snRNP complex assembly GSVIVG01035985001.Genoscope12X.g U2 snRNP-associated SURP motif-containing
Regulatory gene	GSVIVG01000089001.Genoscope12X.g Protein ALWAYS EARLY GSVIVG01000318001.Genoscope12X.g histone deacetylase GSVIVG01001237001.Genoscope12X.g transcription factor

Load All Networks

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map03040	Spliceosome	After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.