Basic Information
Gene ID
GSVIVG01035912001.Genoscope12X.g
Position
chr4:5714446-5716985 (+)
2539bp
Gene Type
gene
Gene Description (Protein Product)
"homogentisate phytyltransferase 1
Organism
Also AS AT2G18950Vitvi04g00535

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
GSVIVG01037438001.Genoscope12X.g Geranylgeranyl diphosphate reductase
GSVIVG01037723001.Genoscope12X.g May be involved in the synthesis of minor phospholipids and in modulation of IP3-mediated signal transduction
GSVIVG01037302001.Genoscope12X.g Belongs to the FPP GGPP synthase family
Regulatory gene
GSVIVG01000802001.Genoscope12X.g Floral homeotic protein
GSVIVG01001437001.Genoscope12X.g Agamous-like MADS-box protein AGL15
GSVIVG01001701001.Genoscope12X.g transcription regulatory region sequence-specific DNA binding

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00130 Ubiquinone and other terpenoid-quinone biosynthesis Ubiquinone (UQ), also called coenzyme Q, and plastoquinone (PQ) are electron carriers in oxidative phosphorylation and photosynthesis, respectively. The quinoid nucleus of ubiquinone is derived from the shikimate pathway; 4-hydroxybenzoate is directly formed from chorismate in bacteria, while it can be formed from either chorismate or tyrosine in yeast. The following biosynthesis of terpenoid moiety involves reactions of prenylation, decarboxylation, and three hydroxylations alternating with three methylations. The order of these reactions are somewhat different between bacteria and yeast. Phylloquinone (vitamin K1), menaquinone (vitamin K2), and tocopherol (vitamin E) are fat-soluble vitamins. Phylloquinone is a compound present in all photosynthetic plants serving as a cofactor for photosystem I-mediated electron transport. Menaquinone is an obligatory component of the electron-transfer pathway in bacteria.