PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	GSVIVG01037100001.Genoscope12X.g View in Genome Browser
Position	chr18:29155211-29158436 (+) 3225bp
Gene Type	gene
Gene Description (Protein Product)	U4 U6.U5 tri-snRNP-associated protein
Organism	Vitis vinifera
Also AS	AT4G22285Vitvi18g03271

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	GSVIVG01038197001.Genoscope12X.g U6 snRNA-associated Sm-like protein GSVIVG01037241001.Genoscope12X.g spliceosomal tri-snRNP complex assembly GSVIVG01038180001.Genoscope12X.g U5 small nuclear ribonucleoprotein 40 kDa
Regulatory gene	GSVIVG01000012001.Genoscope12X.g transcription factor GSVIVG01000318001.Genoscope12X.g histone deacetylase GSVIVG01000717001.Genoscope12X.g Transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map03040	Spliceosome	After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.