Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
GSVIVG01037551001.Genoscope12X.g
View in Genome Browser
Position
chr6:11572429-11572903 (+)
474bp
Gene Type
gene
Gene Description (Protein Product)
GTPase activity
Organism
Vitis vinifera
Also AS AT1G22740Vitvi06g01811

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
GSVIVG01038609001.Genoscope12X.g Vacuolar protein sorting-associated protein
GSVIVG01038607001.Genoscope12X.g Vacuolar protein sorting-associated protein
GSVIVG01038268001.Genoscope12X.g guanosine nucleotide diphosphate dissociation inhibitor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000166 nucleotide binding MF
GO:0000306 obsolete extrinsic component of vacuolar membrane CC
GO:0000323 lytic vacuole CC
GO:0001882 nucleoside binding MF
GO:0001883 purine nucleoside binding MF
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005525 GTP binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005764 lysosome CC
GO:0005765 lysosomal membrane CC
GO:0005768 endosome CC
GO:0005770 late endosome CC
GO:0005773 vacuole CC
GO:0005774 vacuolar membrane CC
GO:0006810 transport BP
GO:0006897 endocytosis BP
GO:0006909 phagocytosis BP
GO:0006914 autophagy BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008219 cell death BP
GO:0009056 catabolic process BP
GO:0009888 tissue development BP
GO:0009893 positive regulation of metabolic process BP
GO:0009894 regulation of catabolic process BP
GO:0009896 positive regulation of catabolic process BP
GO:0009987 cellular process BP
GO:0010008 endosome membrane CC
GO:0010087 phloem or xylem histogenesis BP
GO:0010089 xylem development BP
GO:0010506 regulation of autophagy BP
GO:0010508 positive regulation of autophagy BP
GO:0010623 programmed cell death involved in cell development BP
GO:0012501 programmed cell death BP
GO:0012505 endomembrane system CC
GO:0012506 vesicle membrane CC
GO:0016020 membrane CC
GO:0016192 vesicle-mediated transport BP
GO:0016236 macroautophagy BP
GO:0017076 purine nucleotide binding MF
GO:0019001 guanyl nucleotide binding MF
GO:0019222 regulation of metabolic process BP
GO:0019898 extrinsic component of membrane CC
GO:0030100 regulation of endocytosis BP
GO:0030139 endocytic vesicle CC
GO:0030154 cell differentiation BP
GO:0030659 cytoplasmic vesicle membrane CC
GO:0030666 endocytic vesicle membrane CC
GO:0030670 phagocytic vesicle membrane CC
GO:0031090 organelle membrane CC
GO:0031312 extrinsic component of organelle membrane CC
GO:0031323 regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031329 regulation of cellular catabolic process BP
GO:0031331 positive regulation of cellular catabolic process BP
GO:0031410 cytoplasmic vesicle CC
GO:0031902 late endosome membrane CC
GO:0031982 vesicle CC
GO:0032009 early phagosome CC
GO:0032195 post-lysosomal vacuole CC
GO:0032419 obsolete extrinsic component of lysosome membrane CC
GO:0032502 developmental process BP
GO:0032549 ribonucleoside binding MF
GO:0032550 purine ribonucleoside binding MF
GO:0032553 ribonucleotide binding MF
GO:0032555 purine ribonucleotide binding MF
GO:0032561 guanyl ribonucleotide binding MF
GO:0032879 regulation of localization BP
GO:0033043 regulation of organelle organization BP
GO:0035639 purine ribonucleoside triphosphate binding MF
GO:0036094 small molecule binding MF
GO:0036186 early phagosome membrane CC
GO:0043167 ion binding MF
GO:0043168 anion binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044237 cellular metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044352 pinosome CC
GO:0044354 macropinosome CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044433 obsolete cytoplasmic vesicle part CC
GO:0044437 obsolete vacuolar part CC
GO:0044440 obsolete endosomal part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045335 phagocytic vesicle CC
GO:0045807 positive regulation of endocytosis BP
GO:0048468 cell development BP
GO:0048518 positive regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048548 regulation of pinocytosis BP
GO:0048549 positive regulation of pinocytosis BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051049 regulation of transport BP
GO:0051050 positive regulation of transport BP
GO:0051128 regulation of cellular component organization BP
GO:0051130 positive regulation of cellular component organization BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0060627 regulation of vesicle-mediated transport BP
GO:0061724 lipophagy BP
GO:0061912 selective autophagy BP
GO:0061919 process utilizing autophagic mechanism BP
GO:0065007 biological regulation BP
GO:0097159 organic cyclic compound binding MF
GO:0097367 carbohydrate derivative binding MF
GO:0097708 intracellular vesicle CC
GO:0098588 bounding membrane of organelle CC
GO:0098657 import into cell BP
GO:0098805 membrane CC
GO:0098852 lytic vacuole membrane CC
GO:1901265 nucleoside phosphate binding MF
GO:1901363 heterocyclic compound binding MF
GO:1905162 regulation of phagosome maturation BP
GO:1905177 tracheary element differentiation BP
GO:1905301 regulation of macropinocytosis BP
GO:1905303 positive regulation of macropinocytosis BP
KEGG Term Name Description
map04145 Phagosome Phagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is formed when the specific receptors on the phagocyte surface recognize ligands on the particle surface. After formation, nascent phagosomes progressively acquire digestive characteristics. This maturation of phagosomes involves regulated interaction with the other membrane organelles, including recycling endosomes, late endosomes and lysosomes. The fusion of phagosomes and lysosomes releases toxic products that kill most bacteria and degrade them into fragments. However, some bacteria have strategies to escape the bactericidal mechanisms associated with phagocytosis and survive within host phagocytes.
map04144 Endocytosis Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.