PPGR - Gene Detail

Basic Information

Gene ID	GSVIVG01037836001.Genoscope12X.g View in Genome Browser
Position	chr3:7326029-7339940 (-) 13911bp
Gene Type	gene
Gene Description (Protein Product)	DNA polymerase
Organism	Vitis vinifera
Also AS	AT1G49980Vitvi03g04210

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

GSVIVG01037905001.Genoscope12X.g Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template-dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents

GSVIVG01038547001.Genoscope12X.g Phosphatidylinositol 4-kinase gamma

GSVIVG01037837001.Genoscope12X.g DNA-directed DNA polymerase activity

Regulatory gene

GSVIVG01000940001.Genoscope12X.g NAC transcription factor

GSVIVG01001264001.Genoscope12X.g (NAC) domain-containing protein

GSVIVG01001696001.Genoscope12X.g Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000731	DNA synthesis involved in DNA repair	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003677	DNA binding	MF
GO:0003697	single-stranded DNA binding	MF
GO:0003824	catalytic activity	MF
GO:0003887	DNA-directed DNA polymerase activity	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006259	DNA metabolic process	BP
GO:0006281	DNA repair	BP
GO:0006301	postreplication repair	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006974	cellular response to DNA damage stimulus	BP
GO:0007275	multicellular organism development	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009790	embryo development	BP
GO:0009792	embryo development ending in birth or egg hatching	BP
GO:0009987	cellular process	BP
GO:0016020	membrane	CC
GO:0016740	transferase activity	MF
GO:0016772	transferase activity, transferring phosphorus-containing groups	MF
GO:0016779	nucleotidyltransferase activity	MF
GO:0018130	heterocycle biosynthetic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0019985	translesion synthesis	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0033554	cellular response to stress	BP
GO:0034061	DNA polymerase activity	MF
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0034654	nucleobase-containing compound biosynthetic process	BP
GO:0042276	error-prone translesion synthesis	BP
GO:0043170	macromolecule metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0048856	anatomical structure development	BP
GO:0050896	response to stimulus	BP
GO:0051716	cellular response to stimulus	BP
GO:0071704	organic substance metabolic process	BP
GO:0071897	DNA biosynthetic process	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0097159	organic cyclic compound binding	MF
GO:0140097	catalytic activity, acting on DNA	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:1901576	organic substance biosynthetic process	BP