Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-LOC107421211
View in Genome Browser
Position
NC_063292.1:13634810-13642176 (-)
7366bp
Gene Type
gene
Gene Description (Protein Product)
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Organism
Ziziphus jujuba
Also AS AT3G49500

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC107424297 Cancer-related
gene-LOC107421570 Binds the poly(A) tail of mRNA
gene-LOC112493102 Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Regulatory gene
gene-LOC107403899 dof zinc finger protein
gene-LOC107404240 Dof zinc finger protein
gene-LOC107405930 transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0001172 RNA-templated transcription BP
GO:0002252 immune effector process BP
GO:0002376 immune system process BP
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0003968 RNA-dependent RNA polymerase activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006396 RNA processing BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006952 defense response BP
GO:0006955 immune response BP
GO:0007154 cell communication BP
GO:0007275 multicellular organism development BP
GO:0008037 cell recognition BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009605 response to external stimulus BP
GO:0009607 response to biotic stimulus BP
GO:0009615 response to virus BP
GO:0009616 RNAi-mediated antiviral immune response BP
GO:0009791 post-embryonic development BP
GO:0009856 pollination BP
GO:0009875 pollen-pistil interaction BP
GO:0009888 tissue development BP
GO:0009892 negative regulation of metabolic process BP
GO:0009908 flower development BP
GO:0009987 cellular process BP
GO:0010033 response to organic substance BP
GO:0010073 meristem maintenance BP
GO:0010074 maintenance of meristem identity BP
GO:0010267 ta-siRNA processing BP
GO:0010467 gene expression BP
GO:0010468 regulation of gene expression BP
GO:0010492 maintenance of shoot apical meristem identity BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010608 post-transcriptional regulation of gene expression BP
GO:0010629 negative regulation of gene expression BP
GO:0014070 response to organic cyclic compound BP
GO:0016070 RNA metabolic process BP
GO:0016246 RNA-mediated post-transcriptional gene silencing BP
GO:0016441 post-transcriptional gene silencing BP
GO:0016458 obsolete gene silencing BP
GO:0016740 transferase activity MF
GO:0016772 transferase activity, transferring phosphorus-containing groups MF
GO:0016779 nucleotidyltransferase activity MF
GO:0018130 heterocycle biosynthetic process BP
GO:0019222 regulation of metabolic process BP
GO:0019438 aromatic compound biosynthetic process BP
GO:0019827 stem cell population maintenance BP
GO:0022414 reproductive process BP
GO:0030422 siRNA processing BP
GO:0031047 RNA-mediated gene silencing BP
GO:0031050 ncRNA processing BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032774 RNA biosynthetic process BP
GO:0034062 5'-3' RNA polymerase activity MF
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034654 nucleobase-containing compound biosynthetic process BP
GO:0035194 RNA-mediated post-transcriptional gene silencing BP
GO:0035821 modulation of process of another organism BP
GO:0040029 epigenetic regulation of gene expression BP
GO:0042221 response to chemical BP
GO:0043170 macromolecule metabolic process BP
GO:0043207 response to external biotic stimulus BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043331 response to dsRNA BP
GO:0044003 modulation by symbiont of host process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044403 biological process involved in symbiotic interaction BP
GO:0044419 biological process involved in interspecies interaction between organisms BP
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0044706 multi-multicellular organism process BP
GO:0045087 innate immune response BP
GO:0046483 heterocycle metabolic process BP
GO:0048366 leaf development BP
GO:0048367 shoot system development BP
GO:0048437 floral organ development BP
GO:0048438 floral whorl development BP
GO:0048440 carpel development BP
GO:0048467 gynoecium development BP
GO:0048507 meristem development BP
GO:0048519 negative regulation of biological process BP
GO:0048544 recognition of pollen BP
GO:0048608 reproductive structure development BP
GO:0048731 system development BP
GO:0048827 phyllome development BP
GO:0048856 anatomical structure development BP
GO:0050789 regulation of biological process BP
GO:0050896 response to stimulus BP
GO:0051607 defense response to virus BP
GO:0051701 biological process involved in interaction with host BP
GO:0051704 obsolete multi-organism process BP
GO:0051707 response to other organism BP
GO:0051716 cellular response to stimulus BP
GO:0051817 obsolete modulation of process of other organism involved in symbiotic interaction BP
GO:0052018 obsolete modulation by symbiont of RNA levels in host BP
GO:0052249 obsolete modulation of RNA levels in other organism involved in symbiotic interaction BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0061458 reproductive system development BP
GO:0065007 biological regulation BP
GO:0070887 cellular response to chemical stimulus BP
GO:0070918 regulatory ncRNA processing BP
GO:0071310 cellular response to organic substance BP
GO:0071359 cellular response to dsRNA BP
GO:0071407 cellular response to organic cyclic compound BP
GO:0071704 organic substance metabolic process BP
GO:0090304 nucleic acid metabolic process BP
GO:0090567 reproductive shoot system development BP
GO:0097659 nucleic acid-templated transcription BP
GO:0097747 RNA polymerase activity MF
GO:0098542 defense response to other organism BP
GO:0098586 cellular response to virus BP
GO:0098727 maintenance of cell number BP
GO:0099402 plant organ development BP
GO:0140098 catalytic activity, acting on RNA MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1901698 response to nitrogen compound BP
GO:1901699 cellular response to nitrogen compound BP