PPGR - Gene Detail

Basic Information

Gene ID	gene-LOC107430589 View in Genome Browser
Position	NC_063297.1:17812461-17817431 (+) 4970bp
Gene Type	gene
Gene Description (Protein Product)	ADP-ribosylation factor GTPase-activating protein
Organism	Ziziphus jujuba
Also AS	AT4G17890

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-LOC107431118 ADP-ribosylation factor GTPase-activating protein

gene-LOC107433862 The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles; which further mediate biosynthetic protein transport from the ER; via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes; and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins

gene-LOC107431791 Ras-related protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0001101	response to acid chemical	BP
GO:0003006	developmental process involved in reproduction	BP
GO:0007275	multicellular organism development	BP
GO:0008150	biological_process	BP
GO:0009555	pollen development	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009725	response to hormone	BP
GO:0009737	response to abscisic acid	BP
GO:0009790	embryo development	BP
GO:0009791	post-embryonic development	BP
GO:0009793	embryo development ending in seed dormancy	BP
GO:0010033	response to organic substance	BP
GO:0010154	fruit development	BP
GO:0022414	reproductive process	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0033993	response to lipid	BP
GO:0042221	response to chemical	BP
GO:0048229	gametophyte development	BP
GO:0048316	seed development	BP
GO:0048608	reproductive structure development	BP
GO:0048731	system development	BP
GO:0048856	anatomical structure development	BP
GO:0050896	response to stimulus	BP
GO:0061458	reproductive system development	BP
GO:0097305	response to alcohol	BP
GO:1901700	response to oxygen-containing compound	BP

KEGG Term	Name	Description
map04144	Endocytosis	Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.