Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-LOC107431797
View in Genome Browser
Position
NC_063296.1:25858153-25862729 (+)
4576bp
Gene Type
gene
Gene Description (Protein Product)
Glycine--tRNA ligase 1
Organism
Ziziphus jujuba
Also AS AT1G29880

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC107433948 Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain
gene-LOC107435449 Belongs to the class-I aminoacyl-tRNA synthetase family
gene-LOC107431939 Histidine--tRNA

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000959 mitochondrial RNA metabolic process BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004812 aminoacyl-tRNA ligase activity MF
GO:0004820 glycine-tRNA ligase activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0005768 endosome CC
GO:0005794 Golgi apparatus CC
GO:0005802 trans-Golgi network CC
GO:0005829 cytosol CC
GO:0006082 organic acid metabolic process BP
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006399 tRNA metabolic process BP
GO:0006412 translation BP
GO:0006418 tRNA aminoacylation for protein translation BP
GO:0006426 glycyl-tRNA aminoacylation BP
GO:0006518 peptide metabolic process BP
GO:0006520 amino acid metabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006753 nucleoside phosphate metabolic process BP
GO:0006793 phosphorus metabolic process BP
GO:0006796 phosphate-containing compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009117 nucleotide metabolic process BP
GO:0009165 nucleotide biosynthetic process BP
GO:0009987 cellular process BP
GO:0010035 response to inorganic substance BP
GO:0010038 response to metal ion BP
GO:0010467 gene expression BP
GO:0012505 endomembrane system CC
GO:0015959 diadenosine polyphosphate metabolic process BP
GO:0015960 diadenosine polyphosphate biosynthetic process BP
GO:0015965 diadenosine tetraphosphate metabolic process BP
GO:0015966 diadenosine tetraphosphate biosynthetic process BP
GO:0016070 RNA metabolic process BP
GO:0016874 ligase activity MF
GO:0016875 ligase activity, forming carbon-oxygen bonds MF
GO:0018130 heterocycle biosynthetic process BP
GO:0019438 aromatic compound biosynthetic process BP
GO:0019538 protein metabolic process BP
GO:0019637 organophosphate metabolic process BP
GO:0019752 carboxylic acid metabolic process BP
GO:0031410 cytoplasmic vesicle CC
GO:0031982 vesicle CC
GO:0031984 organelle subcompartment CC
GO:0032543 mitochondrial translation BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0034654 nucleobase-containing compound biosynthetic process BP
GO:0034660 ncRNA metabolic process BP
GO:0042221 response to chemical BP
GO:0043038 amino acid activation BP
GO:0043039 tRNA aminoacylation BP
GO:0043043 peptide biosynthetic process BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043436 oxoacid metabolic process BP
GO:0043603 amide metabolic process BP
GO:0043604 amide biosynthetic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044281 small molecule metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044431 obsolete Golgi apparatus part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0046483 heterocycle metabolic process BP
GO:0046686 response to cadmium ion BP
GO:0046983 protein dimerization activity MF
GO:0050896 response to stimulus BP
GO:0055086 nucleobase-containing small molecule metabolic process BP
GO:0070127 tRNA aminoacylation for mitochondrial protein translation BP
GO:0070150 mitochondrial glycyl-tRNA aminoacylation BP
GO:0071704 organic substance metabolic process BP
GO:0090304 nucleic acid metabolic process BP
GO:0090407 organophosphate biosynthetic process BP
GO:0097708 intracellular vesicle CC
GO:0098791 Golgi apparatus subcompartment CC
GO:0140053 mitochondrial gene expression BP
GO:0140098 catalytic activity, acting on RNA MF
GO:0140101 catalytic activity, acting on a tRNA MF
GO:1901293 nucleoside phosphate biosynthetic process BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
KEGG Term Name Description
map00970 Aminoacyl-tRNA biosynthesis -