Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-LOC107432004
View in Genome Browser
Position
NC_063294.1:16218222-16220803 (+)
2581bp
Gene Type
gene
Gene Description (Protein Product)
Succinate dehydrogenase ubiquinone iron-sulfur subunit
Organism
Ziziphus jujuba
Also AS AT5G65165

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC125424046 Fumarate hydratase
gene-LOC107434241 Alanine aminotransferase
gene-LOC107433840 Succinate dehydrogenase subunit
Regulatory gene
gene-LOC107403899 dof zinc finger protein
gene-LOC107404240 Dof zinc finger protein
gene-LOC107406554 Dof domain; zinc finger

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000104 succinate dehydrogenase activity MF
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0006091 generation of precursor metabolites and energy BP
GO:0006119 oxidative phosphorylation BP
GO:0006121 mitochondrial electron transport, succinate to ubiquinone BP
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006163 purine nucleotide metabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006753 nucleoside phosphate metabolic process BP
GO:0006793 phosphorus metabolic process BP
GO:0006796 phosphate-containing compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009055 electron transfer activity MF
GO:0009060 aerobic respiration BP
GO:0009117 nucleotide metabolic process BP
GO:0009123 nucleoside monophosphate metabolic process BP
GO:0009126 purine nucleoside monophosphate metabolic process BP
GO:0009141 nucleoside triphosphate metabolic process BP
GO:0009144 purine nucleoside triphosphate metabolic process BP
GO:0009150 purine ribonucleotide metabolic process BP
GO:0009161 ribonucleoside monophosphate metabolic process BP
GO:0009167 purine ribonucleoside monophosphate metabolic process BP
GO:0009199 ribonucleoside triphosphate metabolic process BP
GO:0009205 purine ribonucleoside triphosphate metabolic process BP
GO:0009259 ribonucleotide metabolic process BP
GO:0009987 cellular process BP
GO:0015980 energy derivation by oxidation of organic compounds BP
GO:0016020 membrane CC
GO:0016310 phosphorylation BP
GO:0016491 oxidoreductase activity MF
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors MF
GO:0017144 xenobiotic metabolic process BP
GO:0019637 organophosphate metabolic process BP
GO:0019693 ribose phosphate metabolic process BP
GO:0022900 electron transport chain BP
GO:0022904 respiratory electron transport chain BP
GO:0032991 protein-containing complex CC
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0042773 ATP synthesis coupled electron transport BP
GO:0042775 mitochondrial ATP synthesis coupled electron transport BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044281 small molecule metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0045273 respiratory chain complex II CC
GO:0045281 succinate dehydrogenase complex CC
GO:0045333 cellular respiration BP
GO:0046034 ATP metabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0055086 nucleobase-containing small molecule metabolic process BP
GO:0055114 obsolete oxidation-reduction process BP
GO:0070469 respirasome CC
GO:0071704 organic substance metabolic process BP
GO:0072521 purine-containing compound metabolic process BP
GO:0098796 membrane protein complex CC
GO:0098803 respiratory chain complex CC
GO:1901135 carbohydrate derivative metabolic process BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1902494 catalytic complex CC
GO:1990204 oxidoreductase complex CC
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00190 Oxidative phosphorylation -
map00020 Citrate cycle (TCA cycle) The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].