PPGR - Gene Detail

Gene ID	gene-LOC107432091 View in Genome Browser
Position	NC_063298.1:6848941-6854138 (-) 5197bp
Gene Type	gene
Gene Description (Protein Product)	Signal recognition particle 54 kDa protein
Organism	Ziziphus jujuba
Also AS	AT5G03940

upstream:

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Protein-protein interaction (PPI)

gene-LOC125423631 -

gene-LOC125423631 Cell division protein FtsY homolog

gene-LOC125424338 Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane

Load All Networks

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0008150	biological_process	BP
GO:0009507	chloroplast	CC
GO:0009532	plastid stroma	CC
GO:0009536	plastid	CC
GO:0009570	chloroplast stroma	CC
GO:0009987	cellular process	BP
GO:0016043	cellular component organization	BP
GO:0019904	protein domain specific binding	MF
GO:0022607	cellular component assembly	BP
GO:0032991	protein-containing complex	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043933	protein-containing complex organization	BP
GO:0044085	cellular component biogenesis	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044434	obsolete chloroplast part	CC
GO:0044435	obsolete plastid part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0051259	protein complex oligomerization	BP
GO:0051291	protein heterooligomerization	BP
GO:0065003	protein-containing complex assembly	BP
GO:0070206	protein trimerization	BP
GO:0070208	protein heterotrimerization	BP
GO:0071840	cellular component organization or biogenesis	BP

KEGG Term	Name	Description
map03060	Protein export	The protein export is the active transport of proteins from the cytoplasm to the exterior of the cell, or to the periplasmic compartment in Gram-negative bacteria. The sec dependent pathway is the general protein export system that transports newly synthesized proteins into or across the cell membrane. The translocation channel is formed from a conserved trimeric membrane protein complex, called the Sec61/SecY complex. The twin-arginine translocation (Tat) pathway is another protein transport system that transports folded proteins in bacteria, archaea, and chloroplasts. Many Tat systems comprise three functionally different membrane proteins, TatA, TatB, and TatC, but TatA and TatE seem to have overlapping functions, with TatA having by far the more important role.