PPGR - Gene Detail

Basic Information

Gene ID	gene-LOC107433098 View in Genome Browser
Position	NC_063298.1:21354104-21359014 (-) 4910bp
Gene Type	gene
Gene Description (Protein Product)	DnaJ homolog subfamily C member 3 homolog
Organism	Ziziphus jujuba
Also AS	AT5G03160

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-LOC112490881 May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins

gene-LOC125421293 Eukaryotic translation initiation factor 2

gene-LOC107435247 Required for the assembly and or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005783	endoplasmic reticulum	CC
GO:0005788	endoplasmic reticulum lumen	CC
GO:0005886	plasma membrane	CC
GO:0008150	biological_process	BP
GO:0012505	endomembrane system	CC
GO:0016020	membrane	CC
GO:0031974	membrane-enclosed lumen	CC
GO:0035821	modulation of process of another organism	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043900	obsolete regulation of multi-organism process	BP
GO:0043902	obsolete positive regulation of multi-organism process	BP
GO:0043903	regulation of biological process involved in symbiotic interaction	BP
GO:0044403	biological process involved in symbiotic interaction	BP
GO:0044419	biological process involved in interspecies interaction between organisms	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044432	obsolete endoplasmic reticulum part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0044788	modulation by host of viral process	BP
GO:0044794	positive regulation by host of viral process	BP
GO:0048518	positive regulation of biological process	BP
GO:0048524	positive regulation of viral process	BP
GO:0050789	regulation of biological process	BP
GO:0050792	regulation of viral process	BP
GO:0051702	biological process involved in interaction with symbiont	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051817	obsolete modulation of process of other organism involved in symbiotic interaction	BP
GO:0051851	modulation by host of symbiont process	BP
GO:0065007	biological regulation	BP
GO:0070013	intracellular organelle lumen	CC
GO:0071944	cell periphery	CC

KEGG Term	Name	Description
map04141	Protein processing in endoplasmic reticulum	The endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylated. Correctly folded proteins are packaged into transport vesicles that shuttle them to the Golgi complex. Misfolded proteins are retained within the ER lumen in complex with molecular chaperones. Proteins that are terminally misfolded bind to BiP and are directed toward degradation through the proteasome in a process called ER-associated degradation (ERAD). Accumulation of misfolded proteins in the ER causes ER stress and activates a signaling pathway called the unfolded protein response (UPR). In certain severe situations, however, the protective mechanisms activated by the UPR are not sufficient to restore normal ER function and cells die by apoptosis.