PPGR - Gene Detail

Basic Information

Gene ID	gene-LOC107433980 View in Genome Browser
Position	NC_063296.1:4694561-4706763 (-) 12202bp
Gene Type	gene
Gene Description (Protein Product)	Flavonoid 3';5'-methyltransferase-like
Organism	Ziziphus jujuba
Also AS	AT1G67980

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-LOC107434556 4-coumarate--CoA ligase-like

gene-LOC125420411 Cinnamoyl-CoA reductase

gene-LOC125420410 Cinnamoyl-CoA reductase

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008168	methyltransferase activity	MF
GO:0008171	O-methyltransferase activity	MF
GO:0009058	biosynthetic process	BP
GO:0009718	anthocyanin-containing compound biosynthetic process	BP
GO:0009812	flavonoid metabolic process	BP
GO:0009813	flavonoid biosynthetic process	BP
GO:0016137	glycoside metabolic process	BP
GO:0016138	glycoside biosynthetic process	BP
GO:0016740	transferase activity	MF
GO:0016741	transferase activity, transferring one-carbon groups	MF
GO:0032259	methylation	BP
GO:0033485	cyanidin 3-O-glucoside biosynthetic process	BP
GO:0033486	delphinidin 3-O-glucoside biosynthetic process	BP
GO:0042440	pigment metabolic process	BP
GO:0043167	ion binding	MF
GO:0043169	cation binding	MF
GO:0043473	pigmentation	BP
GO:0044424	obsolete intracellular part	CC
GO:0044464	obsolete cell part	CC
GO:0046148	pigment biosynthetic process	BP
GO:0046283	anthocyanin-containing compound metabolic process	BP
GO:0046872	metal ion binding	MF
GO:0071704	organic substance metabolic process	BP
GO:1901038	cyanidin 3-O-glucoside metabolic process	BP
GO:1901135	carbohydrate derivative metabolic process	BP
GO:1901137	carbohydrate derivative biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901657	glycosyl compound metabolic process	BP
GO:1901659	glycosyl compound biosynthetic process	BP
GO:1901804	beta-glucoside metabolic process	BP
GO:1901806	beta-glucoside biosynthetic process	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	Stilbenoids are a group of phenolic compounds, biosynthetically interrelated through their common origin from a C6-C2-C6 intermediate, such as resveratol found in grapes. Stilbenoids can also exist as glycosides (e.g., piceid). Combretastatins are potentially useful stilbenoid natural products with known antitumor activity. Diarylheptanoid is a compound group having phenyl rings at 1,7 positions of n-heptane (C6-C7-C6), such as curcumin found in the ginger family. [6]-Gingerol is a major active component of ginger and has diverse pharmacologic effects.
map00944	Flavone and flavonol biosynthesis	Flavones and flavonols (3-hydroxyflavones) are common flavonoids in the plant kingdom. They are synthesized as part of the flavonoid modification pathways in aglycone and glucoside forms.
map00941	Flavonoid biosynthesis	Flavonoids are a major class of plant secondary metabolites that serves a multitude of functions including pigments and antioxidant activity. Flavonoids are synthesized from phenylpropanoid derivatives by condensation with malonyl-CoA. For example, condensation of p-coumaroyl-CoA (C6-C3) with three malonyl-CoA (C3) molecules results in naringenin chalcone with a diphenylpropane (C6-C3-C6) unit, which is converted to naringenin with the flavone (2-phenylchromen-4-one) backbone by conjugate ring closure. These and further modifications yield a variety of structural forms including chalcones, flavanones, dihyroflavonols, and flavans, anthocyanins, flavones and flavonols, and isoflavonoids.
map00940	Phenylpropanoid biosynthesis	Phenylpropanoids are a group of plant secondary metabolites derived from phenylalanine and having a wide variety of functions both as structural and signaling molecules. Phenylalanine is first converted to cinnamic acid by deamination. It is followed by hydroxylation and frequent methylation to generate coumaric acid and other acids with a phenylpropane (C6-C3) unit. Reduction of the CoA-activated carboxyl groups of these acids results in the corresponding aldehydes and alcohols. The alcohols are called monolignols, the starting compounds for biosynthesis of lignin.