PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	gene-LOC107434135 View in Genome Browser
Position	NW_025964818.1:168124-175185 (+) 7061bp
Gene Type	gene
Gene Description (Protein Product)	4Fe-4S single cluster domain of Ferredoxin I
Organism	Ziziphus jujuba
Also AS	AT2G42750

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-LOC107434656 Protein of unknown function (DUF1230)

gene-LOC112493205 Late embryogenesis abundant protein

gene-LOC107435124 -

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000002	mitochondrial genome maintenance	BP
GO:0000122	negative regulation of transcription by RNA polymerase II	BP
GO:0001775	cell activation	BP
GO:0001776	leukocyte homeostasis	BP
GO:0001932	regulation of protein phosphorylation	BP
GO:0001933	negative regulation of protein phosphorylation	BP
GO:0001941	postsynaptic membrane organization	BP
GO:0001959	regulation of cytokine-mediated signaling pathway	BP
GO:0001960	negative regulation of cytokine-mediated signaling pathway	BP
GO:0002260	lymphocyte homeostasis	BP
GO:0002376	immune system process	BP
GO:0002520	immune system development	BP
GO:0002521	leukocyte differentiation	BP
GO:0002682	regulation of immune system process	BP
GO:0002683	negative regulation of immune system process	BP
GO:0002684	positive regulation of immune system process	BP
GO:0002694	regulation of leukocyte activation	BP
GO:0002696	positive regulation of leukocyte activation	BP
GO:0003674	molecular_function	MF
GO:0005102	signaling receptor binding	MF
GO:0005126	cytokine receptor binding	MF
GO:0005133	type II interferon receptor binding	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005737	cytoplasm	CC
GO:0005739	mitochondrion	CC
GO:0005759	mitochondrial matrix	CC
GO:0005829	cytosol	CC
GO:0005886	plasma membrane	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006259	DNA metabolic process	BP
GO:0006260	DNA replication	BP
GO:0006261	DNA-templated DNA replication	BP
GO:0006264	mitochondrial DNA replication	BP
GO:0006355	regulation of DNA-templated transcription	BP
GO:0006357	regulation of transcription by RNA polymerase II	BP
GO:0006457	protein folding	BP
GO:0006469	negative regulation of protein kinase activity	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006915	apoptotic process	BP
GO:0006919	activation of cysteine-type endopeptidase activity involved in apoptotic process	BP
GO:0006924	activation-induced cell death of T cells	BP
GO:0006950	response to stress	BP
GO:0006952	defense response	BP
GO:0006955	immune response	BP
GO:0006996	organelle organization	BP
GO:0007005	mitochondrion organization	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0007264	small GTPase mediated signal transduction	BP
GO:0007275	multicellular organism development	BP
GO:0007528	neuromuscular junction development	BP
GO:0007568	aging	BP
GO:0007569	obsolete cell aging	BP
GO:0008104	protein localization	BP
GO:0008134	transcription factor binding	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008219	cell death	BP
GO:0008284	positive regulation of cell population proliferation	BP
GO:0008285	negative regulation of cell population proliferation	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009295	nucleoid	CC
GO:0009889	regulation of biosynthetic process	BP
GO:0009890	negative regulation of biosynthetic process	BP
GO:0009892	negative regulation of metabolic process	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009966	regulation of signal transduction	BP
GO:0009968	negative regulation of signal transduction	BP
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010466	negative regulation of peptidase activity	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010558	negative regulation of macromolecule biosynthetic process	BP
GO:0010563	negative regulation of phosphorus metabolic process	BP
GO:0010604	positive regulation of macromolecule metabolic process	BP
GO:0010605	negative regulation of macromolecule metabolic process	BP
GO:0010629	negative regulation of gene expression	BP
GO:0010646	regulation of cell communication	BP
GO:0010648	negative regulation of cell communication	BP
GO:0010941	regulation of cell death	BP
GO:0010942	positive regulation of cell death	BP
GO:0010950	positive regulation of endopeptidase activity	BP
GO:0010951	negative regulation of endopeptidase activity	BP
GO:0010952	positive regulation of peptidase activity	BP
GO:0012501	programmed cell death	BP
GO:0016020	membrane	CC
GO:0016043	cellular component organization	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019220	regulation of phosphate metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019897	extrinsic component of plasma membrane	CC
GO:0019898	extrinsic component of membrane	CC
GO:0019899	enzyme binding	MF
GO:0019900	kinase binding	MF
GO:0019901	protein kinase binding	MF
GO:0022407	regulation of cell-cell adhesion	BP
GO:0022409	positive regulation of cell-cell adhesion	BP
GO:0023051	regulation of signaling	BP
GO:0023052	signaling	BP
GO:0023057	negative regulation of signaling	BP
GO:0030097	hemopoiesis	BP
GO:0030098	lymphocyte differentiation	BP
GO:0030154	cell differentiation	BP
GO:0030155	regulation of cell adhesion	BP
GO:0030162	regulation of proteolysis	BP
GO:0030217	T cell differentiation	BP
GO:0030234	enzyme regulator activity	MF
GO:0030544	Hsp70 protein binding	MF
GO:0030695	GTPase regulator activity	MF
GO:0030971	receptor tyrosine kinase binding	MF
GO:0031072	heat shock protein binding	MF
GO:0031323	regulation of cellular metabolic process	BP
GO:0031324	negative regulation of cellular metabolic process	BP
GO:0031325	positive regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031327	negative regulation of cellular biosynthetic process	BP
GO:0031347	regulation of defense response	BP
GO:0031348	negative regulation of defense response	BP
GO:0031396	regulation of protein ubiquitination	BP
GO:0031398	positive regulation of protein ubiquitination	BP
GO:0031399	regulation of protein modification process	BP
GO:0031400	negative regulation of protein modification process	BP
GO:0031401	positive regulation of protein modification process	BP
GO:0031594	neuromuscular junction	CC
GO:0031647	regulation of protein stability	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0032042	mitochondrial DNA metabolic process	BP
GO:0032088	negative regulation of NF-kappaB transcription factor activity	BP
GO:0032268	regulation of protein metabolic process	BP
GO:0032269	negative regulation of protein metabolic process	BP
GO:0032270	positive regulation of protein metabolic process	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032944	regulation of mononuclear cell proliferation	BP
GO:0032946	positive regulation of mononuclear cell proliferation	BP
GO:0033036	macromolecule localization	BP
GO:0033077	T cell differentiation in thymus	BP
GO:0033673	negative regulation of kinase activity	BP
GO:0034097	response to cytokine	BP
GO:0034341	response to type II interferon	BP
GO:0034613	protein localization	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0035556	intracellular signal transduction	BP
GO:0042102	positive regulation of T cell proliferation	BP
GO:0042110	T cell activation	BP
GO:0042127	regulation of cell population proliferation	BP
GO:0042129	regulation of T cell proliferation	BP
GO:0042221	response to chemical	BP
GO:0042325	regulation of phosphorylation	BP
GO:0042326	negative regulation of phosphorylation	BP
GO:0042592	homeostatic process	BP
GO:0042645	mitochondrial nucleoid	CC
GO:0042981	regulation of apoptotic process	BP
GO:0043029	T cell homeostasis	BP
GO:0043065	positive regulation of apoptotic process	BP
GO:0043066	negative regulation of apoptotic process	BP
GO:0043067	regulation of programmed cell death	BP
GO:0043068	positive regulation of programmed cell death	BP
GO:0043069	negative regulation of programmed cell death	BP
GO:0043085	positive regulation of catalytic activity	BP
GO:0043086	negative regulation of catalytic activity	BP
GO:0043113	receptor clustering	BP
GO:0043122	regulation of I-kappaB kinase/NF-kappaB signaling	BP
GO:0043124	negative regulation of I-kappaB kinase/NF-kappaB signaling	BP
GO:0043154	negative regulation of cysteine-type endopeptidase activity involved in apoptotic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043280	positive regulation of cysteine-type endopeptidase activity involved in apoptotic process	BP
GO:0043281	regulation of cysteine-type endopeptidase activity involved in apoptotic process	BP
GO:0043433	negative regulation of DNA-binding transcription factor activity	BP
GO:0043549	regulation of kinase activity	BP
GO:0044092	negative regulation of molecular function	BP
GO:0044093	positive regulation of molecular function	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044425	obsolete membrane part	CC
GO:0044429	obsolete mitochondrial part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044456	obsolete synapse part	CC
GO:0044459	obsolete plasma membrane part	CC
GO:0044464	obsolete cell part	CC
GO:0045087	innate immune response	BP
GO:0045088	regulation of innate immune response	BP
GO:0045202	synapse	CC
GO:0045211	postsynaptic membrane	CC
GO:0045321	leukocyte activation	BP
GO:0045785	positive regulation of cell adhesion	BP
GO:0045824	negative regulation of innate immune response	BP
GO:0045859	regulation of protein kinase activity	BP
GO:0045861	negative regulation of proteolysis	BP
GO:0045862	positive regulation of proteolysis	BP
GO:0045892	negative regulation of DNA-templated transcription	BP
GO:0045934	negative regulation of nucleobase-containing compound metabolic process	BP
GO:0045936	negative regulation of phosphate metabolic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0046649	lymphocyte activation	BP
GO:0048513	animal organ development	BP
GO:0048518	positive regulation of biological process	BP
GO:0048519	negative regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048523	negative regulation of cellular process	BP
GO:0048534	hematopoietic or lymphoid organ development	BP
GO:0048583	regulation of response to stimulus	BP
GO:0048585	negative regulation of response to stimulus	BP
GO:0048731	system development	BP
GO:0048856	anatomical structure development	BP
GO:0048869	cellular developmental process	BP
GO:0048872	homeostasis of number of cells	BP
GO:0050670	regulation of lymphocyte proliferation	BP
GO:0050671	positive regulation of lymphocyte proliferation	BP
GO:0050776	regulation of immune response	BP
GO:0050777	negative regulation of immune response	BP
GO:0050789	regulation of biological process	BP
GO:0050790	regulation of catalytic activity	BP
GO:0050794	regulation of cellular process	BP
GO:0050808	synapse organization	BP
GO:0050821	protein stabilization	BP
GO:0050863	regulation of T cell activation	BP
GO:0050865	regulation of cell activation	BP
GO:0050867	positive regulation of cell activation	BP
GO:0050870	positive regulation of T cell activation	BP
GO:0050896	response to stimulus	BP
GO:0051059	NF-kappaB binding	MF
GO:0051082	unfolded protein binding	MF
GO:0051090	regulation of DNA-binding transcription factor activity	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051172	negative regulation of nitrogen compound metabolic process	BP
GO:0051173	positive regulation of nitrogen compound metabolic process	BP
GO:0051174	regulation of phosphorus metabolic process	BP
GO:0051179	localization	BP
GO:0051246	regulation of protein metabolic process	BP
GO:0051247	positive regulation of protein metabolic process	BP
GO:0051248	negative regulation of protein metabolic process	BP
GO:0051249	regulation of lymphocyte activation	BP
GO:0051251	positive regulation of lymphocyte activation	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0051253	negative regulation of RNA metabolic process	BP
GO:0051336	regulation of hydrolase activity	BP
GO:0051338	regulation of transferase activity	BP
GO:0051345	positive regulation of hydrolase activity	BP
GO:0051346	negative regulation of hydrolase activity	BP
GO:0051348	negative regulation of transferase activity	BP
GO:0051641	cellular localization	BP
GO:0051668	localization within membrane	BP
GO:0051716	cellular response to stimulus	BP
GO:0052547	regulation of peptidase activity	BP
GO:0052548	regulation of endopeptidase activity	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0060330	regulation of response to type II interferon	BP
GO:0060331	negative regulation of response to type II interferon	BP
GO:0060334	regulation of type II interferon-mediated signaling pathway	BP
GO:0060336	negative regulation of type II interferon-mediated signaling pathway	BP
GO:0060548	negative regulation of cell death	BP
GO:0060589	nucleoside-triphosphatase regulator activity	MF
GO:0060759	regulation of response to cytokine stimulus	BP
GO:0060761	negative regulation of response to cytokine stimulus	BP
GO:0061024	membrane organization	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0065009	regulation of molecular function	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070227	lymphocyte apoptotic process	BP
GO:0070231	T cell apoptotic process	BP
GO:0070663	regulation of leukocyte proliferation	BP
GO:0070665	positive regulation of leukocyte proliferation	BP
GO:0070727	cellular macromolecule localization	BP
GO:0071340	skeletal muscle acetylcholine-gated channel clustering	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0071887	leukocyte apoptotic process	BP
GO:0071944	cell periphery	CC
GO:0072657	protein localization to membrane	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0080134	regulation of response to stress	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0097060	synaptic membrane	CC
GO:0098590	plasma membrane region	CC
GO:0098772	molecular function regulator activity	MF
GO:0098794	postsynapse	CC
GO:0099173	postsynapse organization	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1902531	regulation of intracellular signal transduction	BP
GO:1902532	negative regulation of intracellular signal transduction	BP
GO:1902679	negative regulation of RNA biosynthetic process	BP
GO:1903037	regulation of leukocyte cell-cell adhesion	BP
GO:1903039	positive regulation of leukocyte cell-cell adhesion	BP
GO:1903320	regulation of protein modification by small protein conjugation or removal	BP
GO:1903322	positive regulation of protein modification by small protein conjugation or removal	BP
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:1903507	negative regulation of nucleic acid-templated transcription	BP
GO:1990782	protein tyrosine kinase binding	MF
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2000113	negative regulation of cellular macromolecule biosynthetic process	BP
GO:2000116	regulation of cysteine-type endopeptidase activity	BP
GO:2000117	negative regulation of cysteine-type endopeptidase activity	BP
GO:2001056	positive regulation of cysteine-type endopeptidase activity	BP
GO:2001141	regulation of RNA biosynthetic process	BP