Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-LOC107435092
View in Genome Browser
Position
NC_063287.1:49358302-49363286 (+)
4984bp
Gene Type
gene
Gene Description (Protein Product)
Photosystem II stability assembly factor
Organism
Ziziphus jujuba
Also AS AT5G23120

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC107435850 Protein disulfide-isomerase LQY1
gene-LOC125419351 Photosystem II (PSII) is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O; generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons; and an electron transfer chain that converts photonic excitation into a charge separation. The D1 D2 (PsbA PsbA) reaction center heterodimer binds P680; the primary electron donor of PSII as well as several subsequent electron acceptors. D2 is needed for assembly of a stable PSII complex
gene-LOC125419930 NAD(P)H-quinone oxidoreductase chain 4
Regulatory gene
gene-LOC107403503 isoform X1
gene-LOC107403626 SANT SWI3; ADA2; N-CoR and TFIIIB'' DNA-binding domains
gene-LOC107403899 dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0006996 organelle organization BP
GO:0008150 biological_process BP
GO:0009507 chloroplast CC
GO:0009526 plastid envelope CC
GO:0009532 plastid stroma CC
GO:0009533 chloroplast stromal thylakoid CC
GO:0009534 chloroplast thylakoid CC
GO:0009535 chloroplast thylakoid membrane CC
GO:0009536 plastid CC
GO:0009570 chloroplast stroma CC
GO:0009579 thylakoid CC
GO:0009657 plastid organization BP
GO:0009719 response to endogenous stimulus BP
GO:0009725 response to hormone BP
GO:0009735 response to cytokinin BP
GO:0009941 chloroplast envelope CC
GO:0009987 cellular process BP
GO:0010033 response to organic substance BP
GO:0010035 response to inorganic substance BP
GO:0010038 response to metal ion BP
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0031967 organelle envelope CC
GO:0031975 envelope CC
GO:0031976 plastid thylakoid CC
GO:0031977 thylakoid lumen CC
GO:0031984 organelle subcompartment CC
GO:0034357 photosynthetic membrane CC
GO:0042221 response to chemical BP
GO:0042651 thylakoid membrane CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044434 obsolete chloroplast part CC
GO:0044435 obsolete plastid part CC
GO:0044436 obsolete thylakoid part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0046686 response to cadmium ion BP
GO:0050896 response to stimulus BP
GO:0055035 plastid thylakoid membrane CC
GO:0071840 cellular component organization or biogenesis BP