PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	gene-LOC107435289 View in Genome Browser
Position	NC_063293.1:34266982-34277560 (+) 10578bp
Gene Type	gene
Gene Description (Protein Product)	General negative regulator of transcription subunit
Organism	Ziziphus jujuba
Also AS	AT5G18230

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	gene-LOC125418207 Carbon catabolite repressor protein 4 homolog gene-LOC125419234 CCR4-associated factor 1 homolog gene-LOC107435396 Required for the assembly and or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits
Regulatory gene	gene-LOC107403266 AP2-like ethylene-responsive transcription factor gene-LOC107403899 dof zinc finger protein gene-LOC107404240 Dof zinc finger protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000075	cell cycle checkpoint signaling	BP
GO:0000077	DNA damage checkpoint signaling	BP
GO:0000278	mitotic cell cycle	BP
GO:0000288	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	BP
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	BP
GO:0000932	P-body	CC
GO:0000956	nuclear-transcribed mRNA catabolic process	BP
GO:0001701	in utero embryonic development	BP
GO:0001824	blastocyst development	BP
GO:0001825	blastocyst formation	BP
GO:0001829	trophectodermal cell differentiation	BP
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006401	RNA catabolic process	BP
GO:0006402	mRNA catabolic process	BP
GO:0006417	regulation of translation	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006974	cellular response to DNA damage stimulus	BP
GO:0006977	DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest	BP
GO:0007049	cell cycle	BP
GO:0007093	mitotic cell cycle checkpoint signaling	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0007275	multicellular organism development	BP
GO:0007346	regulation of mitotic cell cycle	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009056	catabolic process	BP
GO:0009057	macromolecule catabolic process	BP
GO:0009653	anatomical structure morphogenesis	BP
GO:0009790	embryo development	BP
GO:0009792	embryo development ending in birth or egg hatching	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009890	negative regulation of biosynthetic process	BP
GO:0009892	negative regulation of metabolic process	BP
GO:0009966	regulation of signal transduction	BP
GO:0009968	negative regulation of signal transduction	BP
GO:0009987	cellular process	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010558	negative regulation of macromolecule biosynthetic process	BP
GO:0010564	regulation of cell cycle process	BP
GO:0010605	negative regulation of macromolecule metabolic process	BP
GO:0010608	post-transcriptional regulation of gene expression	BP
GO:0010629	negative regulation of gene expression	BP
GO:0010646	regulation of cell communication	BP
GO:0010648	negative regulation of cell communication	BP
GO:0010948	negative regulation of cell cycle process	BP
GO:0016070	RNA metabolic process	BP
GO:0016071	mRNA metabolic process	BP
GO:0017148	negative regulation of translation	BP
GO:0019222	regulation of metabolic process	BP
GO:0019439	aromatic compound catabolic process	BP
GO:0022402	cell cycle process	BP
GO:0023051	regulation of signaling	BP
GO:0023052	signaling	BP
GO:0023057	negative regulation of signaling	BP
GO:0030014	CCR4-NOT complex	CC
GO:0030015	CCR4-NOT core complex	CC
GO:0030154	cell differentiation	BP
GO:0030330	DNA damage response, signal transduction by p53 class mediator	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031324	negative regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031327	negative regulation of cellular biosynthetic process	BP
GO:0031570	DNA integrity checkpoint signaling	BP
GO:0031571	mitotic G1 DNA damage checkpoint signaling	BP
GO:0032268	regulation of protein metabolic process	BP
GO:0032269	negative regulation of protein metabolic process	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032991	protein-containing complex	CC
GO:0033143	regulation of intracellular steroid hormone receptor signaling pathway	BP
GO:0033144	negative regulation of intracellular steroid hormone receptor signaling pathway	BP
GO:0033146	regulation of intracellular estrogen receptor signaling pathway	BP
GO:0033147	negative regulation of intracellular estrogen receptor signaling pathway	BP
GO:0033554	cellular response to stress	BP
GO:0034248	regulation of amide metabolic process	BP
GO:0034249	negative regulation of amide metabolic process	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034655	nucleobase-containing compound catabolic process	BP
GO:0035556	intracellular signal transduction	BP
GO:0035770	ribonucleoprotein granule	CC
GO:0036464	cytoplasmic ribonucleoprotein granule	CC
GO:0042770	signal transduction in response to DNA damage	BP
GO:0043009	chordate embryonic development	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044265	cellular macromolecule catabolic process	BP
GO:0044270	cellular nitrogen compound catabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0044773	mitotic DNA damage checkpoint signaling	BP
GO:0044774	mitotic DNA integrity checkpoint signaling	BP
GO:0044783	mitotic G1 DNA damage checkpoint signaling	BP
GO:0044819	mitotic G1/S transition checkpoint signaling	BP
GO:0045786	negative regulation of cell cycle	BP
GO:0045787	positive regulation of cell cycle	BP
GO:0045930	negative regulation of mitotic cell cycle	BP
GO:0046483	heterocycle metabolic process	BP
GO:0046700	heterocycle catabolic process	BP
GO:0048518	positive regulation of biological process	BP
GO:0048519	negative regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048523	negative regulation of cellular process	BP
GO:0048583	regulation of response to stimulus	BP
GO:0048585	negative regulation of response to stimulus	BP
GO:0048646	anatomical structure formation involved in morphogenesis	BP
GO:0048856	anatomical structure development	BP
GO:0048869	cellular developmental process	BP
GO:0050789	regulation of biological process	BP
GO:0050793	regulation of developmental process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051172	negative regulation of nitrogen compound metabolic process	BP
GO:0051239	regulation of multicellular organismal process	BP
GO:0051246	regulation of protein metabolic process	BP
GO:0051248	negative regulation of protein metabolic process	BP
GO:0051716	cellular response to stimulus	BP
GO:0051726	regulation of cell cycle	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0065007	biological regulation	BP
GO:0071156	regulation of cell cycle	BP
GO:0071158	regulation of cell cycle	BP
GO:0071704	organic substance metabolic process	BP
GO:0072331	signal transduction by p53 class mediator	BP
GO:0072395	cell cycle checkpoint signaling	BP
GO:0072401	DNA integrity checkpoint signaling	BP
GO:0072413	mitotic cell cycle checkpoint signaling	BP
GO:0072422	DNA damage checkpoint signaling	BP
GO:0072431	mitotic G1 DNA damage checkpoint signaling	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0090068	positive regulation of cell cycle process	BP
GO:0090304	nucleic acid metabolic process	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901361	organic cyclic compound catabolic process	BP
GO:1901575	organic substance catabolic process	BP
GO:1901987	regulation of cell cycle phase transition	BP
GO:1901988	negative regulation of cell cycle phase transition	BP
GO:1901990	regulation of mitotic cell cycle phase transition	BP
GO:1901991	negative regulation of mitotic cell cycle phase transition	BP
GO:1902400	mitotic G1 DNA damage checkpoint signaling	BP
GO:1902402	mitotic DNA damage checkpoint signaling	BP
GO:1902403	mitotic DNA integrity checkpoint signaling	BP
GO:1902806	regulation of cell cycle G1/S phase transition	BP
GO:1902807	negative regulation of cell cycle G1/S phase transition	BP
GO:1903047	mitotic cell cycle process	BP
GO:1990904	ribonucleoprotein complex	CC
GO:2000036	regulation of stem cell population maintenance	BP
GO:2000045	regulation of G1/S transition of mitotic cell cycle	BP
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2000113	negative regulation of cellular macromolecule biosynthetic process	BP
GO:2000134	negative regulation of G1/S transition of mitotic cell cycle	BP

KEGG Term	Name	Description
map03018	RNA degradation	The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.