Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-LOC107435697
View in Genome Browser
Position
NC_063294.1:5629961-5640117 (-)
10156bp
Gene Type
gene
Gene Description (Protein Product)
Brefeldin A-inhibited guanine nucleotide-exchange protein
Organism
Ziziphus jujuba
Also AS AT3G60860

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC125423700 Ras-related protein
gene-LOC112488804 Ubiquitin exists either covalently attached to another protein; or free (unanchored). When covalently bound; it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin); a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains; when attached to a target protein; have different functions depending on the Lys residue of the ubiquitin that is linked
gene-LOC125420328 Belongs to the small GTPase superfamily. Arf family
Regulatory gene
gene-LOC107403899 dof zinc finger protein
gene-LOC107404240 Dof zinc finger protein
gene-LOC107405930 transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000139 Golgi membrane CC
GO:0001817 regulation of cytokine production BP
GO:0001819 positive regulation of cytokine production BP
GO:0001881 receptor recycling BP
GO:0003674 molecular_function MF
GO:0005085 guanyl-nucleotide exchange factor activity MF
GO:0005086 guanyl-nucleotide exchange factor activity MF
GO:0005102 signaling receptor binding MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0005768 endosome CC
GO:0005794 Golgi apparatus CC
GO:0005802 trans-Golgi network CC
GO:0005815 microtubule organizing center CC
GO:0005829 cytosol CC
GO:0005856 cytoskeleton CC
GO:0005874 microtubule CC
GO:0005879 axonemal microtubule CC
GO:0005881 cytoplasmic microtubule CC
GO:0005929 cilium CC
GO:0005930 axoneme CC
GO:0006810 transport BP
GO:0006887 exocytosis BP
GO:0006892 post-Golgi vesicle-mediated transport BP
GO:0006893 Golgi to plasma membrane transport BP
GO:0006996 organelle organization BP
GO:0007032 endosome organization BP
GO:0007154 cell communication BP
GO:0007165 signal transduction BP
GO:0007275 multicellular organism development BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009553 embryo sac development BP
GO:0009561 megagametogenesis BP
GO:0009987 cellular process BP
GO:0010256 endomembrane system organization BP
GO:0012505 endomembrane system CC
GO:0015031 protein transport BP
GO:0015630 microtubule cytoskeleton CC
GO:0015833 peptide transport BP
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016050 vesicle organization BP
GO:0016192 vesicle-mediated transport BP
GO:0019899 enzyme binding MF
GO:0023051 regulation of signaling BP
GO:0023052 signaling BP
GO:0030425 dendrite CC
GO:0031090 organelle membrane CC
GO:0031410 cytoplasmic vesicle CC
GO:0031982 vesicle CC
GO:0031984 organelle subcompartment CC
GO:0032279 asymmetric synapse CC
GO:0032280 symmetric synapse CC
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032588 trans-Golgi network membrane CC
GO:0032680 regulation of tumor necrosis factor production BP
GO:0032760 positive regulation of tumor necrosis factor production BP
GO:0032838 plasma membrane bounded cell projection cytoplasm CC
GO:0032940 secretion by cell BP
GO:0033036 macromolecule localization BP
GO:0034237 protein kinase A regulatory subunit binding MF
GO:0034613 protein localization BP
GO:0035556 intracellular signal transduction BP
GO:0036477 somatodendritic compartment CC
GO:0042886 amide transport BP
GO:0042995 cell projection CC
GO:0043001 Golgi to plasma membrane protein transport BP
GO:0043005 neuron projection CC
GO:0043112 receptor metabolic process BP
GO:0043170 macromolecule metabolic process BP
GO:0043197 dendritic spine CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0044237 cellular metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044309 neuron spine CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044430 obsolete cytoskeletal part CC
GO:0044431 obsolete Golgi apparatus part CC
GO:0044441 obsolete ciliary part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044447 obsolete axoneme part CC
GO:0044456 obsolete synapse part CC
GO:0044463 obsolete cell projection part CC
GO:0044464 obsolete cell part CC
GO:0045184 establishment of protein localization BP
GO:0045202 synapse CC
GO:0046903 secretion BP
GO:0048193 Golgi vesicle transport BP
GO:0048229 gametophyte development BP
GO:0048518 positive regulation of biological process BP
GO:0048856 anatomical structure development BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050811 GABA receptor binding MF
GO:0050896 response to stimulus BP
GO:0051018 protein kinase A binding MF
GO:0051020 GTPase binding MF
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051240 positive regulation of multicellular organismal process BP
GO:0051641 cellular localization BP
GO:0051716 cellular response to stimulus BP
GO:0055037 recycling endosome CC
GO:0061951 establishment of protein localization to plasma membrane BP
GO:0065007 biological regulation BP
GO:0065009 regulation of molecular function BP
GO:0070727 cellular macromolecule localization BP
GO:0071702 organic substance transport BP
GO:0071704 organic substance metabolic process BP
GO:0071705 nitrogen compound transport BP
GO:0071840 cellular component organization or biogenesis BP
GO:0072657 protein localization to membrane BP
GO:0072659 protein localization to plasma membrane BP
GO:0090150 establishment of protein localization to membrane BP
GO:0097014 ciliary plasm CC
GO:0097447 dendritic tree CC
GO:0097458 obsolete neuron part CC
GO:0097708 intracellular vesicle CC
GO:0098588 bounding membrane of organelle CC
GO:0098772 molecular function regulator activity MF
GO:0098791 Golgi apparatus subcompartment CC
GO:0098794 postsynapse CC
GO:0098876 vesicle-mediated transport to the plasma membrane BP
GO:0098984 neuron to neuron synapse CC
GO:0099080 supramolecular complex CC
GO:0099081 supramolecular polymer CC
GO:0099512 supramolecular fiber CC
GO:0099513 polymeric cytoskeletal fiber CC
GO:0099568 cytoplasmic region CC
GO:0120025 plasma membrane bounded cell projection CC
GO:0120038 obsolete plasma membrane bounded cell projection part CC
GO:1903555 regulation of tumor necrosis factor superfamily cytokine production BP
GO:1903557 positive regulation of tumor necrosis factor superfamily cytokine production BP
GO:1990778 protein localization to cell periphery BP
KEGG Term Name Description
map04144 Endocytosis Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.