PPGR - Gene Detail

Basic Information

Gene ID	gene-LOC125418978 View in Genome Browser
Position	NC_063297.1:22347933-22349962 (+) 2029bp
Gene Type	gene
Gene Description (Protein Product)	Pyridoxine pyridoxamine 5'-phosphate oxidase
Organism	Ziziphus jujuba
Also AS	AT2G46580

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-LOC125424231 pyridoxal biosynthesis protein PDX1.2

gene-LOC125419482 Component of the cytochrome b6-f complex; which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI); cyclic electron flow around PSI; and state transitions

gene-LOC125420346 PsaA and PsaB bind P700; the primary electron donor of photosystem I (PSI); as well as the electron acceptors A0; A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase; converting photonic excitation into a charge separation; which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0; A1; FX; FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004733	pyridoxamine-phosphate oxidase activity	MF
GO:0006081	cellular aldehyde metabolic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006732	obsolete coenzyme metabolic process	BP
GO:0006766	vitamin metabolic process	BP
GO:0006767	water-soluble vitamin metabolic process	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009108	obsolete coenzyme biosynthetic process	BP
GO:0009110	vitamin biosynthetic process	BP
GO:0009443	pyridoxal 5'-phosphate salvage	BP
GO:0009987	cellular process	BP
GO:0016491	oxidoreductase activity	MF
GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	MF
GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	MF
GO:0017144	xenobiotic metabolic process	BP
GO:0018130	heterocycle biosynthetic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0019637	organophosphate metabolic process	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0042364	water-soluble vitamin biosynthetic process	BP
GO:0042816	vitamin B6 metabolic process	BP
GO:0042819	vitamin B6 biosynthetic process	BP
GO:0042822	pyridoxal phosphate metabolic process	BP
GO:0042823	pyridoxal phosphate biosynthetic process	BP
GO:0043094	cellular metabolic compound salvage	BP
GO:0044237	cellular metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044283	small molecule biosynthetic process	BP
GO:0046184	aldehyde biosynthetic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0051186	obsolete cofactor metabolic process	BP
GO:0051188	obsolete cofactor biosynthetic process	BP
GO:0055114	obsolete oxidation-reduction process	BP
GO:0071704	organic substance metabolic process	BP
GO:0072524	pyridine-containing compound metabolic process	BP
GO:0072525	pyridine-containing compound biosynthetic process	BP
GO:0090407	organophosphate biosynthetic process	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901615	organic hydroxy compound metabolic process	BP
GO:1901617	organic hydroxy compound biosynthetic process	BP

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00750	Vitamin B6 metabolism	-