PPGR - Gene Detail

Basic Information

Gene ID	gene-LOC125420052 View in Genome Browser
Position	NW_025964652.1:51289-51897 (+) 608bp
Gene Type	gene
Gene Description (Protein Product)	RNA polymerase Rpb1; domain 5
Organism	Ziziphus jujuba
Also AS	ATCG00160

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-LOC125420457 NDH shuttles electrons from NAD(P)H plastoquinone; via FMN and iron-sulfur (Fe-S) centers; to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation; and thus conserves the redox energy in a proton gradient

gene-LOC125420136 Belongs to the universal ribosomal protein uS11 family

gene-LOC125421604 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map03020	RNA polymerase	-
map01100	Metabolic pathways	-
map00195	Photosynthesis	Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.
map00190	Oxidative phosphorylation	-