Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-LOC125422172
View in Genome Browser
Position
NC_063290.1:2281931-2284547 (+)
2616bp
Gene Type
gene
Gene Description (Protein Product)
Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure phagophore assembly site (PAS); the nucleating site for formation of the sequestering vesicle
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Organism
Ziziphus jujuba
Also AS AT2G31260

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC125423715 Serine threonine-protein kinase
gene-LOC125422984 Protein present in Fab1; YOTB; Vac1; and EEA1
gene-LOC125424379 dnaJ homolog subfamily C member
Regulatory gene
gene-LOC107403899 dof zinc finger protein
gene-LOC107404240 Dof zinc finger protein
gene-LOC107405038 Zinc-finger homeodomain protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000045 autophagosome assembly BP
GO:0000407 phagophore assembly site CC
GO:0000422 autophagy of mitochondrion BP
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005773 vacuole CC
GO:0005776 autophagosome CC
GO:0006914 autophagy BP
GO:0006950 response to stress BP
GO:0006952 defense response BP
GO:0006996 organelle organization BP
GO:0007005 mitochondrion organization BP
GO:0007033 vacuole organization BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009056 catabolic process BP
GO:0009605 response to external stimulus BP
GO:0009607 response to biotic stimulus BP
GO:0009620 response to fungus BP
GO:0009987 cellular process BP
GO:0016043 cellular component organization BP
GO:0016236 macroautophagy BP
GO:0022411 cellular component disassembly BP
GO:0022607 cellular component assembly BP
GO:0033036 macromolecule localization BP
GO:0034497 protein localization to phagophore assembly site BP
GO:0034613 protein localization BP
GO:0043207 response to external biotic stimulus BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0044804 autophagy of nucleus BP
GO:0044805 late nucleophagy BP
GO:0050832 defense response to fungus BP
GO:0050896 response to stimulus BP
GO:0051179 localization BP
GO:0051641 cellular localization BP
GO:0051704 obsolete multi-organism process BP
GO:0051707 response to other organism BP
GO:0061726 mitochondrion disassembly BP
GO:0061919 process utilizing autophagic mechanism BP
GO:0070727 cellular macromolecule localization BP
GO:0070925 organelle assembly BP
GO:0071840 cellular component organization or biogenesis BP
GO:0098542 defense response to other organism BP
GO:1903008 organelle disassembly BP
GO:1905037 autophagosome organization BP