Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-LOC125423930
View in Genome Browser
Position
NC_063294.1:11828042-11831129 (-)
3087bp
Gene Type
gene
Gene Description (Protein Product)
iron ion binding
Organism
Ziziphus jujuba
Also AS AT4G37370

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC125424249 -
gene-LOC125424300 elongation of fatty acids protein
Regulatory gene
gene-LOC107403500 transcription factor
gene-LOC107404041 NAC domain-containing protein
gene-LOC107404081 NAC domain-containing protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0001666 response to hypoxia BP
GO:0002213 defense response to insect BP
GO:0002376 immune system process BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004497 monooxygenase activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005783 endoplasmic reticulum CC
GO:0006082 organic acid metabolic process BP
GO:0006629 lipid metabolic process BP
GO:0006720 isoprenoid metabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006790 sulfur compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006952 defense response BP
GO:0006955 immune response BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008299 isoprenoid biosynthetic process BP
GO:0008610 lipid biosynthetic process BP
GO:0009058 biosynthetic process BP
GO:0009605 response to external stimulus BP
GO:0009607 response to biotic stimulus BP
GO:0009617 response to bacterium BP
GO:0009620 response to fungus BP
GO:0009628 response to abiotic stimulus BP
GO:0009682 induced systemic resistance BP
GO:0009759 indole glucosinolate biosynthetic process BP
GO:0009987 cellular process BP
GO:0010035 response to inorganic substance BP
GO:0010038 response to metal ion BP
GO:0010039 response to iron ion BP
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016143 S-glycoside metabolic process BP
GO:0016144 S-glycoside biosynthetic process BP
GO:0016491 oxidoreductase activity MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen MF
GO:0018130 heterocycle biosynthetic process BP
GO:0019438 aromatic compound biosynthetic process BP
GO:0019748 secondary metabolic process BP
GO:0019757 glycosinolate metabolic process BP
GO:0019758 glycosinolate biosynthetic process BP
GO:0019760 glucosinolate metabolic process BP
GO:0019761 glucosinolate biosynthetic process BP
GO:0033036 macromolecule localization BP
GO:0033037 polysaccharide localization BP
GO:0033554 cellular response to stress BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0036293 response to decreased oxygen levels BP
GO:0036294 cellular response to decreased oxygen levels BP
GO:0042214 terpene metabolic process BP
GO:0042221 response to chemical BP
GO:0042343 indole glucosinolate metabolic process BP
GO:0042430 indole-containing compound metabolic process BP
GO:0042435 indole-containing compound biosynthetic process BP
GO:0042545 cell wall modification BP
GO:0042742 defense response to bacterium BP
GO:0043207 response to external biotic stimulus BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043436 oxoacid metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044255 cellular lipid metabolic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044272 sulfur compound biosynthetic process BP
GO:0044281 small molecule metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0044550 secondary metabolite biosynthetic process BP
GO:0045087 innate immune response BP
GO:0045229 external encapsulating structure organization BP
GO:0046246 terpene biosynthetic process BP
GO:0046483 heterocycle metabolic process BP
GO:0050832 defense response to fungus BP
GO:0050896 response to stimulus BP
GO:0051179 localization BP
GO:0051641 cellular localization BP
GO:0051704 obsolete multi-organism process BP
GO:0051707 response to other organism BP
GO:0051716 cellular response to stimulus BP
GO:0052386 cell wall thickening BP
GO:0052482 defense response by cell wall thickening BP
GO:0052542 defense response by callose deposition BP
GO:0052543 callose deposition in cell wall BP
GO:0052544 defense response by callose deposition in cell wall BP
GO:0052545 callose localization BP
GO:0055114 obsolete oxidation-reduction process BP
GO:0070482 response to oxygen levels BP
GO:0070727 cellular macromolecule localization BP
GO:0070887 cellular response to chemical stimulus BP
GO:0071241 cellular response to inorganic substance BP
GO:0071248 cellular response to metal ion BP
GO:0071281 cellular response to iron ion BP
GO:0071453 cellular response to oxygen levels BP
GO:0071456 cellular response to hypoxia BP
GO:0071554 cell wall organization or biogenesis BP
GO:0071555 cell wall organization BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0097007 4,8,12-trimethyltrideca-1,3,7,11-tetraene synthase activity MF
GO:0097008 (3E)-4,8-dimethyl-1,3,7-nonatriene synthase activity MF
GO:0098542 defense response to other organism BP
GO:1901135 carbohydrate derivative metabolic process BP
GO:1901137 carbohydrate derivative biosynthetic process BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1901657 glycosyl compound metabolic process BP
GO:1901659 glycosyl compound biosynthetic process BP
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map01100 Metabolic pathways -
map01100 Metabolic pathways -
map01100 Metabolic pathways -
map01100 Metabolic pathways -
map00943 Isoflavonoid biosynthesis Isoflavonoids are biologically active compounds, such as phytoestrogens, produced by pea family plants. While flavonoids (in the narrow sense) have the 2-phenylchromen-4-one backbone, isoflavonoids have the 3-phenylchromen-4-one backbone with no hydroxyl group substitution at position 2. Isoflavonoids are derived from the flavonoid biosynthesis pathway via liquiritigenin or naringenin.
map00905 Brassinosteroid biosynthesis Brassinosteroids are a group of plant steroid hormones that regulate growth and development. More than fifty naturally occurring brassinosteroids have been identified in a wide range of plant species. The most abundant and widely occurring brassinosteroids are C28 steroids, and among them brassinolide (BL) is the most biologically active. Plants have multiple pathways for biosynthesis of BL, which are derived from the steroid biosynthetic pathway. Two pathways from campestanol to castasterone (CS), C6 oxidation and the late-C6 oxidation pathways, operate in many plants. Another branching pathway, the early-C22 oxidation pathway, was demonstrated using a brassinosteroid-deficient mutant of Arabidopsis thaliana. Recently, a new shortcut pathway from campesterol to 6-deoxotyphasterol was demonstrated by a functional analysis of cytochrome P450 monooxygenases responsible for brassinosteroid biosynthesis. Thus, at least four pathways are involved in the biosynthesis of CS, and CS is further metabolized to BL by lactonization of the B ring.
map00591 Linoleic acid metabolism -
map00590 Arachidonic acid metabolism -
map00380 Tryptophan metabolism -