Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-LOC125424097
View in Genome Browser
Position
NC_063295.1:21218103-21220883 (+)
2780bp
Gene Type
gene
Gene Description (Protein Product)
polyamine transporter At1g31830 isoform X1
Polyamine transporter
Organism
Ziziphus jujuba
Also AS AT1G31830

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC125424251 Ribosome-recycling factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0002376 immune system process BP
GO:0003333 amino acid transmembrane transport BP
GO:0003674 molecular_function MF
GO:0005215 transporter activity MF
GO:0005342 organic acid transmembrane transporter activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005886 plasma membrane CC
GO:0005887 plasma membrane CC
GO:0006082 organic acid metabolic process BP
GO:0006520 amino acid metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006810 transport BP
GO:0006811 monoatomic ion transport BP
GO:0006820 monoatomic anion transport BP
GO:0006865 amino acid transport BP
GO:0006928 obsolete movement of cell or subcellular component BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008509 monoatomic anion transmembrane transporter activity MF
GO:0008514 organic anion transmembrane transporter activity MF
GO:0009987 cellular process BP
GO:0015075 monoatomic ion transmembrane transporter activity MF
GO:0015171 amino acid transmembrane transporter activity MF
GO:0015179 L-amino acid transmembrane transporter activity MF
GO:0015203 polyamine transmembrane transporter activity MF
GO:0015291 secondary active transmembrane transporter activity MF
GO:0015297 antiporter activity MF
GO:0015318 inorganic molecular entity transmembrane transporter activity MF
GO:0015711 organic anion transport BP
GO:0015807 L-amino acid transport BP
GO:0015846 polyamine transport BP
GO:0015849 organic acid transport BP
GO:0016020 membrane CC
GO:0016021 membrane CC
GO:0016043 cellular component organization BP
GO:0016477 cell migration BP
GO:0019752 carboxylic acid metabolic process BP
GO:0022607 cellular component assembly BP
GO:0022804 active transmembrane transporter activity MF
GO:0022857 transmembrane transporter activity MF
GO:0031224 obsolete intrinsic component of membrane CC
GO:0031226 obsolete intrinsic component of plasma membrane CC
GO:0034220 monoatomic ion transmembrane transport BP
GO:0040011 locomotion BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043436 oxoacid metabolic process BP
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044281 small molecule metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044459 obsolete plasma membrane part CC
GO:0044464 obsolete cell part CC
GO:0046942 carboxylic acid transport BP
GO:0046943 carboxylic acid transmembrane transporter activity MF
GO:0048870 cell motility BP
GO:0050900 leukocyte migration BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051674 localization of cell BP
GO:0055085 transmembrane transport BP
GO:0065003 protein-containing complex assembly BP
GO:0071702 organic substance transport BP
GO:0071704 organic substance metabolic process BP
GO:0071705 nitrogen compound transport BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0098656 monoatomic anion transmembrane transport BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1902047 polyamine transmembrane transport BP
GO:1902475 L-alpha-amino acid transmembrane transport BP
GO:1903825 organic acid transmembrane transport BP
GO:1905039 carboxylic acid transmembrane transport BP
KEGG Term Name Description
map03015 mRNA surveillance pathway The mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go decay (NGD). NMD is a mechanism that eliminates mRNAs containing premature translation-termination codons (PTCs). In vertebrates, PTCs trigger efficient NMD when located upstream of an exon junction complex (EJC). Upf3, together with Upf1 and Upf2, may signal the presence of the PTC to the 5'end of the transcript, resulting in decapping and rapid exonucleolytic digestion of the mRNA. In the NSD pathway, which targets mRNAs lacking termination codons, the ribosome is believed to translate through the 3' untranslated region and stall at the end of the poly(A) tail. NSD involves an eRF3-like protein, Ski7p, which is hypothesized to bind the empty A site of the ribosome and recruit the exosome to degrade the mRNA from the 3' end. NGD targets mRNAs with stalls in translation elongation for endonucleolytic cleavage in a process involving the Dom34 and Hbs1 proteins.