PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	gene-LOC125424257 View in Genome Browser
Position	NC_063295.1:27388551-27394284 (+) 5733bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the uridine kinase family
Organism	Ziziphus jujuba
Also AS	AT5G40870

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004845	uracil phosphoribosyltransferase activity	MF
GO:0004849	uridine kinase activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006109	regulation of carbohydrate metabolic process	BP
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006206	pyrimidine nucleobase metabolic process	BP
GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	BP
GO:0006213	pyrimidine nucleoside metabolic process	BP
GO:0006220	pyrimidine nucleotide metabolic process	BP
GO:0006221	pyrimidine nucleotide biosynthetic process	BP
GO:0006222	UMP biosynthetic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006753	nucleoside phosphate metabolic process	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008655	pyrimidine-containing compound salvage	BP
GO:0009058	biosynthetic process	BP
GO:0009112	nucleobase metabolic process	BP
GO:0009116	nucleoside metabolic process	BP
GO:0009117	nucleotide metabolic process	BP
GO:0009119	ribonucleoside metabolic process	BP
GO:0009123	nucleoside monophosphate metabolic process	BP
GO:0009124	nucleoside monophosphate biosynthetic process	BP
GO:0009129	pyrimidine nucleoside monophosphate metabolic process	BP
GO:0009130	pyrimidine nucleoside monophosphate biosynthetic process	BP
GO:0009156	ribonucleoside monophosphate biosynthetic process	BP
GO:0009161	ribonucleoside monophosphate metabolic process	BP
GO:0009163	nucleoside biosynthetic process	BP
GO:0009165	nucleotide biosynthetic process	BP
GO:0009173	pyrimidine ribonucleoside monophosphate metabolic process	BP
GO:0009174	pyrimidine ribonucleoside monophosphate biosynthetic process	BP
GO:0009218	pyrimidine ribonucleotide metabolic process	BP
GO:0009220	pyrimidine ribonucleotide biosynthetic process	BP
GO:0009259	ribonucleotide metabolic process	BP
GO:0009260	ribonucleotide biosynthetic process	BP
GO:0009507	chloroplast	CC
GO:0009536	plastid	CC
GO:0009889	regulation of biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0010138	pyrimidine ribonucleotide salvage	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010675	regulation of cellular carbohydrate metabolic process	BP
GO:0010962	regulation of glucan biosynthetic process	BP
GO:0016301	kinase activity	MF
GO:0016310	phosphorylation	BP
GO:0016740	transferase activity	MF
GO:0016757	glycosyltransferase activity	MF
GO:0016763	pentosyltransferase activity	MF
GO:0016772	transferase activity, transferring phosphorus-containing groups	MF
GO:0018130	heterocycle biosynthetic process	BP
GO:0019205	nucleobase-containing compound kinase activity	MF
GO:0019206	nucleoside kinase activity	MF
GO:0019222	regulation of metabolic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0019637	organophosphate metabolic process	BP
GO:0019693	ribose phosphate metabolic process	BP
GO:0019856	pyrimidine nucleobase biosynthetic process	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0032262	pyrimidine nucleotide salvage	BP
GO:0032881	regulation of polysaccharide metabolic process	BP
GO:0032885	regulation of polysaccharide biosynthetic process	BP
GO:0032950	regulation of beta-glucan metabolic process	BP
GO:0032951	regulation of beta-glucan biosynthetic process	BP
GO:0034404	nucleobase-containing small molecule biosynthetic process	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034654	nucleobase-containing compound biosynthetic process	BP
GO:0042455	ribonucleoside biosynthetic process	BP
GO:0043094	cellular metabolic compound salvage	BP
GO:0043097	pyrimidine nucleoside salvage	BP
GO:0043173	nucleotide salvage	BP
GO:0043174	nucleoside salvage	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043255	regulation of carbohydrate biosynthetic process	BP
GO:0043455	regulation of secondary metabolic process	BP
GO:0044206	UMP salvage	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044283	small molecule biosynthetic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046049	UMP metabolic process	BP
GO:0046112	nucleobase biosynthetic process	BP
GO:0046131	pyrimidine ribonucleoside metabolic process	BP
GO:0046132	pyrimidine ribonucleoside biosynthetic process	BP
GO:0046134	pyrimidine nucleoside biosynthetic process	BP
GO:0046390	ribose phosphate biosynthetic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0055086	nucleobase-containing small molecule metabolic process	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0065007	biological regulation	BP
GO:0071704	organic substance metabolic process	BP
GO:0072527	pyrimidine-containing compound metabolic process	BP
GO:0072528	pyrimidine-containing compound biosynthetic process	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0090407	organophosphate biosynthetic process	BP
GO:1900376	regulation of secondary metabolite biosynthetic process	BP
GO:1901135	carbohydrate derivative metabolic process	BP
GO:1901137	carbohydrate derivative biosynthetic process	BP
GO:1901141	regulation of lignin biosynthetic process	BP
GO:1901293	nucleoside phosphate biosynthetic process	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901657	glycosyl compound metabolic process	BP
GO:1901659	glycosyl compound biosynthetic process	BP
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2000762	regulation of phenylpropanoid metabolic process	BP
GO:2000904	regulation of starch metabolic process	BP
GO:2001006	regulation of cellulose biosynthetic process	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map01100	Metabolic pathways	-
map01100	Metabolic pathways	-
map00710	Carbon fixation in photosynthetic organisms	-
map00240	Pyrimidine metabolism	-
map00240	Pyrimidine metabolism	-
map00040	Pentose and glucuronate interconversions	-
map00030	Pentose phosphate pathway	The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].