PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Pop_G06G014306 View in Genome Browser
Position	chrG06:21577640-21582468 (-) 4828bp
Gene Type	gene
Gene Description (Protein Product)	Ribose-5-phosphate isomerase
Organism	Populus alba x Populus glandulosa
Also AS	Potri.006G039700AT3G04790Potri.006G039700.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Pop_G11G077713 Glutathione S-transferase Pop_G13G071009 Ribose-5-phosphate isomerase Pop_G16G068568 Belongs to the PdxS SNZ family
Regulatory gene	Pop_A01G003802 AP2-like ethylene-responsive transcription factor Pop_A01G005990 MADS-box transcription factor Pop_A01G029538 AP2-like ethylene-responsive transcription factor
Target gene	Pop_A01G003842 ABC transporter B family member Pop_A01G010358 Ceramidase Pop_A01G027303

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000302	response to reactive oxygen species	BP
GO:0001306	obsolete age-dependent response to oxidative stress	BP
GO:0001315	obsolete age-dependent response to reactive oxygen species	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004751	ribose-5-phosphate isomerase activity	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0005975	carbohydrate metabolic process	BP
GO:0005996	monosaccharide metabolic process	BP
GO:0006014	D-ribose metabolic process	BP
GO:0006081	cellular aldehyde metabolic process	BP
GO:0006098	pentose-phosphate shunt	BP
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006732	obsolete coenzyme metabolic process	BP
GO:0006733	obsolete oxidoreduction coenzyme metabolic process	BP
GO:0006739	NADP metabolic process	BP
GO:0006753	nucleoside phosphate metabolic process	BP
GO:0006766	vitamin metabolic process	BP
GO:0006767	water-soluble vitamin metabolic process	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006979	response to oxidative stress	BP
GO:0007568	aging	BP
GO:0007571	obsolete age-dependent general metabolic decline	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008614	pyridoxine metabolic process	BP
GO:0008615	pyridoxine biosynthetic process	BP
GO:0009052	pentose-phosphate shunt, non-oxidative branch	BP
GO:0009058	biosynthetic process	BP
GO:0009110	vitamin biosynthetic process	BP
GO:0009117	nucleotide metabolic process	BP
GO:0009987	cellular process	BP
GO:0016853	isomerase activity	MF
GO:0016860	intramolecular oxidoreductase activity	MF
GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	MF
GO:0017144	xenobiotic metabolic process	BP
GO:0018130	heterocycle biosynthetic process	BP
GO:0019321	pentose metabolic process	BP
GO:0019362	pyridine nucleotide metabolic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0019637	organophosphate metabolic process	BP
GO:0019682	glyceraldehyde-3-phosphate metabolic process	BP
GO:0019693	ribose phosphate metabolic process	BP
GO:0030246	carbohydrate binding	MF
GO:0032502	developmental process	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0036094	small molecule binding	MF
GO:0042221	response to chemical	BP
GO:0042364	water-soluble vitamin biosynthetic process	BP
GO:0042802	identical protein binding	MF
GO:0042816	vitamin B6 metabolic process	BP
GO:0042819	vitamin B6 biosynthetic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044283	small molecule biosynthetic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046483	heterocycle metabolic process	BP
GO:0046496	nicotinamide nucleotide metabolic process	BP
GO:0048029	monosaccharide binding	MF
GO:0050896	response to stimulus	BP
GO:0051156	glucose 6-phosphate metabolic process	BP
GO:0051186	obsolete cofactor metabolic process	BP
GO:0051188	obsolete cofactor biosynthetic process	BP
GO:0055086	nucleobase-containing small molecule metabolic process	BP
GO:0071704	organic substance metabolic process	BP
GO:0072524	pyridine-containing compound metabolic process	BP
GO:0072525	pyridine-containing compound biosynthetic process	BP
GO:1901135	carbohydrate derivative metabolic process	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901615	organic hydroxy compound metabolic process	BP
GO:1901617	organic hydroxy compound biosynthetic process	BP
GO:1901700	response to oxygen-containing compound	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map01100	Metabolic pathways	-
map00710	Carbon fixation in photosynthetic organisms	-
map00520	Amino sugar and nucleotide sugar metabolism	-
map00250	Alanine, aspartate and glutamate metabolism	-
map00030	Pentose phosphate pathway	The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].