Basic Information
Gene ID
Pop_G10G048104
Position
chrG10:7394581-7395890 (+)
1309bp
Gene Type
gene
Gene Description (Protein Product)
"Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Unwinds duplex DNA. Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search
Organism
Also AS Potri.006G135200AT5G20850Potri.006G135200.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_UnG034277 Forkhead associated domain
Pop_G18G080113 DNA repair protein XRCC3 homolog
Pop_G19G009752 DNA mismatch repair protein
Regulatory gene
Pop_A01G004199 GAGA binding protein-like family
Pop_A02G005181 Protein BASIC PENTACYSTEINE6-like
Pop_A04G028302 Protein BASIC PENTACYSTEINE4-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03440 Homologous recombination Homologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves the generation of a single-stranded region of DNA, followed by strand invasion, formation of a Holliday junction, DNA synthesis using the intact strand as a template, branch migration and resolution. It is investigated that RecA/Rad51 family proteins play a central role. The breast cancer susceptibility protein Brca2 and the RecQ helicase BLM (Bloom syndrome mutated) are tumor suppressors that maintain genome integrity, at least in part, through HR.