Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pop_G11G077808
View in Genome Browser
Position
chrG11:3986158-3989422 (-)
3264bp
Gene Type
gene
Gene Description (Protein Product)
ABC transporter G family member
Organism
Populus alba x Populus glandulosa
Also AS Potri.011G123200AT4G27420Potri.011G123200.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G18G034262 ABC transporter G family member
Pop_G17G087323 ABC transporter G family member
Pop_G11G077808 ABC transporter G family member
Regulatory gene
Pop_A01G005990 MADS-box transcription factor
Pop_A01G025061 B3 DNA binding domain
Pop_A01G032239 B3 domain-containing transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0003002 regionalization BP
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0005215 transporter activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005623 obsolete cell CC
GO:0005886 plasma membrane CC
GO:0006810 transport BP
GO:0007275 multicellular organism development BP
GO:0007389 pattern specification process BP
GO:0008150 biological_process BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009790 embryo development BP
GO:0009791 post-embryonic development BP
GO:0009793 embryo development ending in seed dormancy BP
GO:0009965 leaf morphogenesis BP
GO:0010016 shoot system morphogenesis BP
GO:0010051 xylem and phloem pattern formation BP
GO:0010154 fruit development BP
GO:0010222 stem vascular tissue pattern formation BP
GO:0010588 cotyledon vascular tissue pattern formation BP
GO:0015399 primary active transmembrane transporter activity MF
GO:0015405 ATPase-coupled transmembrane transporter activity MF
GO:0016020 membrane CC
GO:0016021 membrane CC
GO:0016462 pyrophosphatase activity MF
GO:0016787 hydrolase activity MF
GO:0016817 hydrolase activity, acting on acid anhydrides MF
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides MF
GO:0016887 ATP hydrolysis activity MF
GO:0017111 ribonucleoside triphosphate phosphatase activity MF
GO:0022414 reproductive process BP
GO:0022804 active transmembrane transporter activity MF
GO:0022857 transmembrane transporter activity MF
GO:0031224 obsolete intrinsic component of membrane CC
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0042623 ATP hydrolysis activity MF
GO:0042626 ATPase-coupled transmembrane transporter activity MF
GO:0042802 identical protein binding MF
GO:0042803 protein homodimerization activity MF
GO:0043492 ATPase-coupled transmembrane transporter activity MF
GO:0044425 obsolete membrane part CC
GO:0044464 obsolete cell part CC
GO:0046983 protein dimerization activity MF
GO:0048316 seed development BP
GO:0048366 leaf development BP
GO:0048367 shoot system development BP
GO:0048598 embryonic morphogenesis BP
GO:0048608 reproductive structure development BP
GO:0048731 system development BP
GO:0048825 cotyledon development BP
GO:0048826 cotyledon morphogenesis BP
GO:0048827 phyllome development BP
GO:0048856 anatomical structure development BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0055085 transmembrane transport BP
GO:0061458 reproductive system development BP
GO:0071944 cell periphery CC
GO:0090698 post-embryonic plant morphogenesis BP
GO:0099402 plant organ development BP
GO:1905392 plant organ morphogenesis BP
KEGG Term Name Description
map02010 ABC transporters The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).