PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Pop_G12G068290 View in Genome Browser
Position	chrG12:5677729-5683508 (-) 5779bp
Gene Type	gene
Gene Description (Protein Product)	Isochorismate synthase
Organism	Populus alba x Populus glandulosa
Also AS	Potri.012G070000AT1G18870Potri.012G070000.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Pop_G14G000629 Aspartate aminotransferase Pop_G18G083266 Aspartate aminotransferase Pop_G18G078503 Aspartate aminotransferase
Regulatory gene	Pop_A01G056931 Dof zinc finger protein Pop_A01G059879 Dof zinc finger protein Pop_A02G012400 Dof zinc finger protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0002376	immune system process	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005739	mitochondrion	CC
GO:0005740	mitochondrial envelope	CC
GO:0005741	mitochondrial outer membrane	CC
GO:0006082	organic acid metabolic process	BP
GO:0006575	cellular modified amino acid metabolic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006732	obsolete coenzyme metabolic process	BP
GO:0006760	folic acid-containing compound metabolic process	BP
GO:0006766	vitamin metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006952	defense response	BP
GO:0006955	immune response	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008483	transaminase activity	MF
GO:0008909	isochorismate synthase activity	MF
GO:0009058	biosynthetic process	BP
GO:0009108	obsolete coenzyme biosynthetic process	BP
GO:0009110	vitamin biosynthetic process	BP
GO:0009266	response to temperature stimulus	BP
GO:0009396	folic acid-containing compound biosynthetic process	BP
GO:0009409	response to cold	BP
GO:0009507	chloroplast	CC
GO:0009536	plastid	CC
GO:0009605	response to external stimulus	BP
GO:0009607	response to biotic stimulus	BP
GO:0009617	response to bacterium	BP
GO:0009620	response to fungus	BP
GO:0009627	systemic acquired resistance	BP
GO:0009628	response to abiotic stimulus	BP
GO:0009696	salicylic acid metabolic process	BP
GO:0009697	salicylic acid biosynthetic process	BP
GO:0009814	defense response to other organism	BP
GO:0009987	cellular process	BP
GO:0010118	stomatal movement	BP
GO:0010817	regulation of hormone levels	BP
GO:0016020	membrane	CC
GO:0016053	organic acid biosynthetic process	BP
GO:0016740	transferase activity	MF
GO:0016769	transferase activity, transferring nitrogenous groups	MF
GO:0016853	isomerase activity	MF
GO:0016866	intramolecular transferase activity	MF
GO:0016999	antibiotic metabolic process	BP
GO:0017000	antibiotic biosynthetic process	BP
GO:0017144	xenobiotic metabolic process	BP
GO:0018130	heterocycle biosynthetic process	BP
GO:0018958	phenol-containing compound metabolic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0019752	carboxylic acid metabolic process	BP
GO:0019867	outer membrane	CC
GO:0031090	organelle membrane	CC
GO:0031347	regulation of defense response	BP
GO:0031348	negative regulation of defense response	BP
GO:0031966	mitochondrial membrane	CC
GO:0031967	organelle envelope	CC
GO:0031968	organelle outer membrane	CC
GO:0031975	envelope	CC
GO:0032787	monocarboxylic acid metabolic process	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0042180	cellular ketone metabolic process	BP
GO:0042181	ketone biosynthetic process	BP
GO:0042372	phylloquinone biosynthetic process	BP
GO:0042374	phylloquinone metabolic process	BP
GO:0042398	cellular modified amino acid biosynthetic process	BP
GO:0042445	hormone metabolic process	BP
GO:0042446	hormone biosynthetic process	BP
GO:0042537	benzene-containing compound metabolic process	BP
GO:0042558	pteridine-containing compound metabolic process	BP
GO:0042559	pteridine-containing compound biosynthetic process	BP
GO:0042742	defense response to bacterium	BP
GO:0043207	response to external biotic stimulus	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043436	oxoacid metabolic process	BP
GO:0043603	amide metabolic process	BP
GO:0043604	amide biosynthetic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044283	small molecule biosynthetic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044429	obsolete mitochondrial part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0045087	innate immune response	BP
GO:0046189	phenol-containing compound biosynthetic process	BP
GO:0046394	carboxylic acid biosynthetic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0046653	tetrahydrofolate metabolic process	BP
GO:0046654	tetrahydrofolate biosynthetic process	BP
GO:0046820	4-amino-4-deoxychorismate synthase activity	MF
GO:0048519	negative regulation of biological process	BP
GO:0048583	regulation of response to stimulus	BP
GO:0048585	negative regulation of response to stimulus	BP
GO:0050486	intramolecular transferase activity, transferring hydroxy groups	MF
GO:0050789	regulation of biological process	BP
GO:0050832	defense response to fungus	BP
GO:0050896	response to stimulus	BP
GO:0051186	obsolete cofactor metabolic process	BP
GO:0051188	obsolete cofactor biosynthetic process	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051707	response to other organism	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0071704	organic substance metabolic process	BP
GO:0072330	monocarboxylic acid biosynthetic process	BP
GO:0080134	regulation of response to stress	BP
GO:0098542	defense response to other organism	BP
GO:0098588	bounding membrane of organelle	CC
GO:0098805	membrane	CC
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901615	organic hydroxy compound metabolic process	BP
GO:1901617	organic hydroxy compound biosynthetic process	BP
GO:1901661	quinone metabolic process	BP
GO:1901663	quinone biosynthetic process	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00130	Ubiquinone and other terpenoid-quinone biosynthesis	Ubiquinone (UQ), also called coenzyme Q, and plastoquinone (PQ) are electron carriers in oxidative phosphorylation and photosynthesis, respectively. The quinoid nucleus of ubiquinone is derived from the shikimate pathway; 4-hydroxybenzoate is directly formed from chorismate in bacteria, while it can be formed from either chorismate or tyrosine in yeast. The following biosynthesis of terpenoid moiety involves reactions of prenylation, decarboxylation, and three hydroxylations alternating with three methylations. The order of these reactions are somewhat different between bacteria and yeast. Phylloquinone (vitamin K1), menaquinone (vitamin K2), and tocopherol (vitamin E) are fat-soluble vitamins. Phylloquinone is a compound present in all photosynthetic plants serving as a cofactor for photosystem I-mediated electron transport. Menaquinone is an obligatory component of the electron-transfer pathway in bacteria.