PPGR - Gene Detail

Basic Information

Gene ID	Pop_G15G017290 View in Genome Browser
Position	chrG15:4005850-4008569 (+) 2719bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the malate synthase family
Organism	Populus alba x Populus glandulosa
Also AS	Potri.015G092000AT5G03860Potri.015G092000.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Pop_G18G078638 NADP-dependent malic

Pop_G19G007579 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA

Pop_G15G074272 Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate- level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit

Regulatory gene

Pop_A01G004199 GAGA binding protein-like family

Pop_A02G005181 Protein BASIC PENTACYSTEINE6-like

Pop_A04G028302 Protein BASIC PENTACYSTEINE4-like

Load All Networks

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004474	malate synthase activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005777	peroxisome	CC
GO:0005975	carbohydrate metabolic process	BP
GO:0006081	cellular aldehyde metabolic process	BP
GO:0006082	organic acid metabolic process	BP
GO:0006097	glyoxylate cycle	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009514	glyoxysome	CC
GO:0009987	cellular process	BP
GO:0016740	transferase activity	MF
GO:0016746	acyltransferase activity	MF
GO:0019752	carboxylic acid metabolic process	BP
GO:0032787	monocarboxylic acid metabolic process	BP
GO:0042579	microbody	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043436	oxoacid metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044262	cellular carbohydrate metabolic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046487	glyoxylate metabolic process	BP
GO:0046912	acyltransferase activity, acyl groups converted into alkyl on transfer	MF
GO:0071704	organic substance metabolic process	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00630	Glyoxylate and dicarboxylate metabolism	-
map00620	Pyruvate metabolism	-