Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
EVM0032160
View in Genome Browser
Position
GWHASIS00001973:11467910-11479352 (-)
11442bp
Gene Type
gene
Gene Description (Protein Product)
splicing factor
Organism
Acer catalpifolium
Also AS AT2G33435

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
EVM0033927 DEAD-box ATP-dependent RNA helicase
EVM0034732 Splicing factor 3B subunit
EVM0032898 splicing factor

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000243 commitment complex CC
GO:0000375 RNA splicing, via transesterification reactions BP
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile BP
GO:0000398 mRNA splicing, via spliceosome BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003723 RNA binding MF
GO:0003727 single-stranded RNA binding MF
GO:0003729 mRNA binding MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005681 spliceosomal complex CC
GO:0005684 U2-type spliceosomal complex CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006396 RNA processing BP
GO:0006397 mRNA processing BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006810 transport BP
GO:0006913 nucleocytoplasmic transport BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008187 poly-pyrimidine tract binding MF
GO:0008380 RNA splicing BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0016070 RNA metabolic process BP
GO:0016071 mRNA metabolic process BP
GO:0016604 nuclear body CC
GO:0016607 nuclear speck CC
GO:0030628 pre-mRNA 3'-splice site binding MF
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032239 regulation of nucleobase-containing compound transport BP
GO:0032241 positive regulation of nucleobase-containing compound transport BP
GO:0032386 regulation of intracellular transport BP
GO:0032388 positive regulation of intracellular transport BP
GO:0032879 regulation of localization BP
GO:0032991 protein-containing complex CC
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0036002 pre-mRNA binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044464 obsolete cell part CC
GO:0046483 heterocycle metabolic process BP
GO:0046822 regulation of nucleocytoplasmic transport BP
GO:0046824 positive regulation of nucleocytoplasmic transport BP
GO:0046831 regulation of RNA export from nucleus BP
GO:0046833 positive regulation of RNA export from nucleus BP
GO:0046907 intracellular transport BP
GO:0048518 positive regulation of biological process BP
GO:0050789 regulation of biological process BP
GO:0051049 regulation of transport BP
GO:0051050 positive regulation of transport BP
GO:0051168 nuclear export BP
GO:0051169 nuclear transport BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0060341 regulation of cellular localization BP
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0071004 U2-type prespliceosome CC
GO:0071010 prespliceosome CC
GO:0071704 organic substance metabolic process BP
GO:0089701 U2AF complex CC
GO:0090304 nucleic acid metabolic process BP
GO:0097159 organic cyclic compound binding MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901363 heterocyclic compound binding MF
GO:1990904 ribonucleoprotein complex CC
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.