Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
ACNE_27284.g
View in Genome Browser
Position
acne_003:42113198-42118364 (-)
5166bp
Gene Type
gene
Gene Description (Protein Product)
Pre-mRNA-splicing factor
Organism
Acer negundo
Also AS AT1G65660

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
ACNE_30064.g Pre-mRNA-splicing factor
ACNE_29889.g pre-mRNA-splicing factor
ACNE_27875.g U5 small nuclear ribonucleoprotein 200 kDa
Regulatory gene
ACNE_08995.g Protein BASIC PENTACYSTEINE4-like
ACNE_11426.g Protein BASIC PENTACYSTEINE6-like
ACNE_19841.g Protein BASIC PENTACYSTEINE2-like

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.