Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Basic Information
Gene ID
gene-CEY00_Acc16530
View in Genome Browser
Position
CM009668.1:2887449-2890815 (-)
3366bp
Gene Type
gene
Gene Description (Protein Product)
SAGA-associated factor 11
Organism
Actinidia chinensis
Also AS AT5G58575CEY00_Acc16530

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-CEY00_Acc30527 Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery
gene-CEY00_Acc29232 Ubiquitin carboxyl-terminal hydrolase
gene-CEY00_Acc18776 Ubiquitin carboxyl-terminal hydrolase
Regulatory gene
gene-CEY00_Acc00008 Transcription factor JUNGBRUNNEN 1-like
gene-CEY00_Acc00753 NAC domain-containing protein
gene-CEY00_Acc00767 (NAC) domain-containing protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)