PPGR - Gene Detail

Basic Information

Gene ID	gene-CEY00_Acc25990 View in Genome Browser
Position	CM009676.1:6372791-6382119 (+) 9328bp
Gene Type	gene
Gene Description (Protein Product)	Splicing factor U2af small subunit
Organism	Actinidia chinensis
Also AS	AT1G27650CEY00_Acc25990

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-CEY00_Acc25990 Splicing factor U2af small subunit

gene-CEY00_Acc26352 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked

gene-CEY00_Acc26088 Ubiquitin family

Target gene

gene-CEY00_Acc00065 Pentatricopeptide repeat-containing protein

gene-CEY00_Acc00400 inactive leucine-rich repeat receptor-like protein kinase At3g03770 isoform X1

gene-CEY00_Acc00507

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map03040	Spliceosome	After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.