PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	gene-CEY00_Acc33554 View in Genome Browser
Position	CM009666.1:11202080-11207084 (-) 5004bp
Gene Type	gene
Gene Description (Protein Product)	"actin
Organism	Actinidia chinensis
Also AS	AT3G53750CEY00_Acc33554

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	gene-CEY00_Acc33554 actin, beta gene-CEY00_Acc33681 Belongs to the DEAD box helicase family gene-CEY00_Acc33713 Belongs to the small GTPase superfamily. Rho family
Regulatory gene	gene-CEY00_Acc00082 B3 domain-containing gene-CEY00_Acc00463 Zinc finger protein gene-CEY00_Acc00755 ZINC FINGER protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	BP
GO:0000123	histone acetyltransferase complex	CC
GO:0001932	regulation of protein phosphorylation	BP
GO:0002252	immune effector process	BP
GO:0002253	activation of immune response	BP
GO:0002376	immune system process	BP
GO:0002429	immune response-activating cell surface receptor signaling pathway	BP
GO:0002431	Fc receptor mediated stimulatory signaling pathway	BP
GO:0002433	immune response-regulating cell surface receptor signaling pathway involved in phagocytosis	BP
GO:0002682	regulation of immune system process	BP
GO:0002684	positive regulation of immune system process	BP
GO:0002757	immune response-activating signaling pathway	BP
GO:0002764	immune response-regulating signaling pathway	BP
GO:0002768	immune response-regulating cell surface receptor signaling pathway	BP
GO:0003674	molecular_function	MF
GO:0005198	structural molecule activity	MF
GO:0005200	structural constituent of cytoskeleton	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0005856	cytoskeleton	CC
GO:0005886	plasma membrane	CC
GO:0005912	adherens junction	CC
GO:0005924	obsolete cell-substrate adherens junction	CC
GO:0005925	focal adhesion	CC
GO:0006464	protein modification process	BP
GO:0006508	proteolysis	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006810	transport	BP
GO:0006897	endocytosis	BP
GO:0006909	phagocytosis	BP
GO:0006928	obsolete movement of cell or subcellular component	BP
GO:0006996	organelle organization	BP
GO:0007010	cytoskeleton organization	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0007166	cell surface receptor signaling pathway	BP
GO:0007167	enzyme-linked receptor protein signaling pathway	BP
GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway	BP
GO:0008092	cytoskeletal protein binding	MF
GO:0008134	transcription factor binding	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009636	response to toxic substance	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010046	response to mycotoxin	BP
GO:0010243	response to organonitrogen compound	BP
GO:0010468	regulation of gene expression	BP
GO:0010604	positive regulation of macromolecule metabolic process	BP
GO:0010628	positive regulation of gene expression	BP
GO:0014070	response to organic cyclic compound	BP
GO:0015629	actin cytoskeleton	CC
GO:0016020	membrane	CC
GO:0016043	cellular component organization	BP
GO:0016192	vesicle-mediated transport	BP
GO:0016579	protein deubiquitination	BP
GO:0019220	regulation of phosphate metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019538	protein metabolic process	BP
GO:0019894	kinesin binding	MF
GO:0019899	enzyme binding	MF
GO:0019900	kinase binding	MF
GO:0019901	protein kinase binding	MF
GO:0022607	cellular component assembly	BP
GO:0022898	regulation of transmembrane transporter activity	BP
GO:0023052	signaling	BP
GO:0030029	actin filament-based process	BP
GO:0030036	actin cytoskeleton organization	BP
GO:0030054	cell junction	CC
GO:0030055	cell-substrate junction	CC
GO:0030957	Tat protein binding	MF
GO:0031248	protein acetyltransferase complex	CC
GO:0031323	regulation of cellular metabolic process	BP
GO:0031399	regulation of protein modification process	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032091	negative regulation of protein binding	BP
GO:0032268	regulation of protein metabolic process	BP
GO:0032409	regulation of transporter activity	BP
GO:0032879	regulation of localization	BP
GO:0032880	regulation of protein localization	BP
GO:0032991	protein-containing complex	CC
GO:0034329	cell junction assembly	BP
GO:0034330	cell junction organization	BP
GO:0034762	regulation of transmembrane transport	BP
GO:0035267	NuA4 histone acetyltransferase complex	CC
GO:0035690	cellular response to xenobiotic stimulus	BP
GO:0035770	ribonucleoprotein granule	CC
GO:0036146	cellular response to mycotoxin	BP
GO:0036211	protein modification process	BP
GO:0036464	cytoplasmic ribonucleoprotein granule	CC
GO:0038093	Fc receptor signaling pathway	BP
GO:0038094	Fc-gamma receptor signaling pathway	BP
GO:0038096	Fc-gamma receptor signaling pathway involved in phagocytosis	BP
GO:0040011	locomotion	BP
GO:0040029	epigenetic regulation of gene expression	BP
GO:0042221	response to chemical	BP
GO:0042325	regulation of phosphorylation	BP
GO:0042493	response to xenobiotic stimulus	BP
GO:0042802	identical protein binding	MF
GO:0043170	macromolecule metabolic process	BP
GO:0043189	H4/H2A histone acetyltransferase complex	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043393	regulation of protein binding	BP
GO:0043412	macromolecule modification	BP
GO:0043549	regulation of kinase activity	BP
GO:0044085	cellular component biogenesis	BP
GO:0044092	negative regulation of molecular function	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044451	obsolete nucleoplasm part	CC
GO:0044456	obsolete synapse part	CC
GO:0044464	obsolete cell part	CC
GO:0045202	synapse	CC
GO:0045815	transcription initiation-coupled chromatin remodeling	BP
GO:0045859	regulation of protein kinase activity	BP
GO:0048013	ephrin receptor signaling pathway	BP
GO:0048518	positive regulation of biological process	BP
GO:0048583	regulation of response to stimulus	BP
GO:0048584	positive regulation of response to stimulus	BP
GO:0048870	cell motility	BP
GO:0050776	regulation of immune response	BP
GO:0050778	positive regulation of immune response	BP
GO:0050789	regulation of biological process	BP
GO:0050790	regulation of catalytic activity	BP
GO:0050794	regulation of cellular process	BP
GO:0050808	synapse organization	BP
GO:0050896	response to stimulus	BP
GO:0050998	nitric-oxide synthase binding	MF
GO:0051049	regulation of transport	BP
GO:0051050	positive regulation of transport	BP
GO:0051098	regulation of binding	BP
GO:0051100	negative regulation of binding	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051174	regulation of phosphorus metabolic process	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0051246	regulation of protein metabolic process	BP
GO:0051338	regulation of transferase activity	BP
GO:0051621	regulation of norepinephrine uptake	BP
GO:0051623	positive regulation of norepinephrine uptake	BP
GO:0051674	localization of cell	BP
GO:0051716	cellular response to stimulus	BP
GO:0051726	regulation of cell cycle	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0060341	regulation of cellular localization	BP
GO:0061024	membrane organization	BP
GO:0061478	response to platelet aggregation inhibitor	BP
GO:0065007	biological regulation	BP
GO:0065009	regulation of molecular function	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070161	anchoring junction	CC
GO:0070646	protein modification by small protein removal	BP
GO:0070647	protein modification by small protein conjugation or removal	BP
GO:0070887	cellular response to chemical stimulus	BP
GO:0071310	cellular response to organic substance	BP
GO:0071407	cellular response to organic cyclic compound	BP
GO:0071417	cellular response to organonitrogen compound	BP
GO:0071495	cellular response to endogenous stimulus	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0071900	regulation of protein serine/threonine kinase activity	BP
GO:0071944	cell periphery	CC
GO:0072749	cellular response to cytochalasin B	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0097237	cellular response to toxic substance	BP
GO:0097433	dense body	CC
GO:0097458	obsolete neuron part	CC
GO:0098657	import into cell	BP
GO:0098793	presynapse	CC
GO:0098918	structural constituent of synapse	MF
GO:0098973	structural constituent of postsynaptic actin cytoskeleton	MF
GO:0098974	postsynaptic actin cytoskeleton organization	BP
GO:0099173	postsynapse organization	BP
GO:0099186	structural constituent of postsynapse	MF
GO:0099188	postsynaptic cytoskeleton organization	BP
GO:1901328	response to cytochalasin B	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901698	response to nitrogen compound	BP
GO:1901699	cellular response to nitrogen compound	BP
GO:1901700	response to oxygen-containing compound	BP
GO:1901701	cellular response to oxygen-containing compound	BP
GO:1902493	acetyltransferase complex	CC
GO:1902494	catalytic complex	CC
GO:1902562	H4 histone acetyltransferase complex	CC
GO:1903076	regulation of protein localization to plasma membrane	BP
GO:1903827	regulation of protein localization	BP
GO:1904029	regulation of cyclin-dependent protein kinase activity	BP
GO:1904375	regulation of protein localization to cell periphery	BP
GO:1905475	regulation of protein localization to membrane	BP
GO:1990234	transferase complex	CC
GO:1990904	ribonucleoprotein complex	CC

KEGG Term	Name	Description
map04145	Phagosome	Phagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is formed when the specific receptors on the phagocyte surface recognize ligands on the particle surface. After formation, nascent phagosomes progressively acquire digestive characteristics. This maturation of phagosomes involves regulated interaction with the other membrane organelles, including recycling endosomes, late endosomes and lysosomes. The fusion of phagosomes and lysosomes releases toxic products that kill most bacteria and degrade them into fragments. However, some bacteria have strategies to escape the bactericidal mechanisms associated with phagocytosis and survive within host phagocytes.