Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
AmTr_scaff00001.114.v1.0.g
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Position
AmTr_scaff00001:1952378-1962578 (+)
10200bp
Gene Type
gene
Gene Description (Protein Product)
Ankyrin repeat domain-containing protein
Organism
Amborella trichopoda
Also AS AT5G66055AMTR_s00001p00138080

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff00080.53.v1.0.g Ankyrin repeat domain-containing protein EMB506
AmTr_scaff00057.102.v1.0.g 1-deoxy-D-xylulose-5-phosphate synthase
AmTr_scaff00088.44.v1.0.g ankyrin repeat-containing protein
Regulatory gene
AmTr_scaff00001.380.v1.0.g reveille
AmTr_scaff00001.511.v1.0.g Protein LHY-like isoform X1
AmTr_scaff00002.671.v1.0.g B3 domain-containing protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0009507 chloroplast CC
GO:0009536 plastid CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.