PPGR - Gene Detail

Basic Information

Gene ID	AmTr_scaff00030.58.v1.0.g View in Genome Browser
Position	AmTr_scaff00030:1459314-1459763 (-) 449bp
Gene Type	gene
Gene Description (Protein Product)	Dehydrogenase
Organism	Amborella trichopoda
Also AS	AT4G39330AMTR_s00030p00113790

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

AmTr_scaff00144.10.v1.0.g Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

AmTr_scaff00071.61.v1.0.g Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

AmTr_scaff00083.28.v1.0.g Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Regulatory gene

AmTr_scaff00001.225.v1.0.g Floral homeotic protein

AmTr_scaff00001.409.v1.0.g MADS-box protein

AmTr_scaff00001.413.v1.0.g MADS-box transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009605	response to external stimulus	BP
GO:0009607	response to biotic stimulus	BP
GO:0009617	response to bacterium	BP
GO:0009698	phenylpropanoid metabolic process	BP
GO:0009699	phenylpropanoid biosynthetic process	BP
GO:0009808	lignin metabolic process	BP
GO:0009809	lignin biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0016491	oxidoreductase activity	MF
GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	MF
GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	MF
GO:0019438	aromatic compound biosynthetic process	BP
GO:0019748	secondary metabolic process	BP
GO:0043207	response to external biotic stimulus	BP
GO:0044237	cellular metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044550	secondary metabolite biosynthetic process	BP
GO:0045551	cinnamyl-alcohol dehydrogenase activity	MF
GO:0047681	aryl-alcohol dehydrogenase (NADP+) activity	MF
GO:0050896	response to stimulus	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051707	response to other organism	BP
GO:0055114	obsolete oxidation-reduction process	BP
GO:0071704	organic substance metabolic process	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00940	Phenylpropanoid biosynthesis	Phenylpropanoids are a group of plant secondary metabolites derived from phenylalanine and having a wide variety of functions both as structural and signaling molecules. Phenylalanine is first converted to cinnamic acid by deamination. It is followed by hydroxylation and frequent methylation to generate coumaric acid and other acids with a phenylpropane (C6-C3) unit. Reduction of the CoA-activated carboxyl groups of these acids results in the corresponding aldehydes and alcohols. The alcohols are called monolignols, the starting compounds for biosynthesis of lignin.