PPGR - Gene Detail

Basic Information

Gene ID	AmTr_scaff00038.78.v1.0.g View in Genome Browser
Position	AmTr_scaff00038:1846454-1859123 (-) 12669bp
Gene Type	gene
Gene Description (Protein Product)	SAC3 family
Organism	Amborella trichopoda
Also AS	AT3G54380AMTR_s00038p00133080

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

AmTr_scaff00092.159.v1.0.g Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery

AmTr_scaff00136.19.v1.0.g PCI domain-containing protein

AmTr_scaff00136.18.v1.0.g PCI domain-containing protein

Regulatory gene

AmTr_scaff00001.225.v1.0.g Floral homeotic protein

AmTr_scaff00001.409.v1.0.g MADS-box protein

AmTr_scaff00001.413.v1.0.g MADS-box transcription factor

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