Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
AmTr_scaff00049.161.v1.0.g
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Position
AmTr_scaff00049:2822742-2826776 (+)
4034bp
Gene Type
gene
Gene Description (Protein Product)
Pectate lyase
Organism
Amborella trichopoda
Also AS AT5G63180AMTR_s00049p00173370

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff00056.146.v1.0.g pectinesterase
AmTr_scaff00090.11.v1.0.g Polygalacturonase-like
AmTr_scaff00129.22.v1.0.g Acts in the modification of cell walls via demethylesterification of cell wall pectin
Regulatory gene
AmTr_scaff00006.175.v1.0.g bpc6, bbr bpc6, atbpc6 atbpc6
AmTr_scaff00024.47.v1.0.g Protein BASIC PENTACYSTEINE2-like
AmTr_scaff00185.21.v1.0.g Protein BASIC PENTACYSTEINE6-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Pathway
KEGG Term Name Description
map01100 Metabolic pathways -
map00040 Pentose and glucuronate interconversions -